Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4924 149 6e-31 seq5812 132 5e-26 seq10551 114 1e-20 seq65591 93.3 4e-14 seq65597 84.2 2e-11 >seq4924 Length=6499587 Score = 149 bits (164), Expect = 6e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| |||||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 3090850 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3090909 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || ||||| || || || || || ||| Sbjct 3090910 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 3090969 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||||||| | || | |||||||||||||| || Sbjct 3090970 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3091029 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 3091030 TTCACGAAGATTTGCATTTT 3091049 >seq5812 Length=6624047 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | || ||||||| ||||||| |||||||| ||| Sbjct 3075809 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075750 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || || || ||||| || || ||| Sbjct 3075749 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 3075690 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| ||||||||||| Sbjct 3075689 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAAGTC 3075630 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 3075629 TTCACGAAGATCTGCATT 3075612 >seq10551 Length=27482606 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| ||| || || |||||||||||||| || | | || || | ||||| Sbjct 16152390 CACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTC 16152331 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||||| ||| | | || | ||||| || ||||||||| |||| || | || Sbjct 16152330 CAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTG 16152271 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| || | |||||| || || || || | ||| | |||||| Sbjct 16152270 GATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGGTCTT 16152211 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| | ||||| |||||||| ||||| || Sbjct 16152210 CCCGGTAAGGGTTTTCACGAAAATCTGCATCTT 16152178 >seq65591 Length=11041708 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || ||||||||| ||||||| | | | | | | Sbjct 2177375 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCC 2177434 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| | |||||||||||||| || Sbjct 2177435 ATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTT 2177494 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || |||| | | || | |||||| || || || | | ||| | Sbjct 2177495 ATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAAT 2177554 Query 64408 GGTCTTGCCGGTCAAA---GTTTTTACGAAAATTTGCATTTTAATAATG 64453 |||||| || ||| | ||||| || ||||| ||||| ||| |||| Sbjct 2177555 GGTCTTCCC--TCATAAGGGTTTTCACAAAAATCTGCATCTTAGCAATG 2177601 >seq65597 Length=65395183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | || || ||||| ||||||||||| |||| || ||||| ||| Sbjct 13732729 AAGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTC 13732788 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| ||||| ||| |||| || | ||||||||| | || || ||||| || || Sbjct 13732789 CTCCAGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTC 13732848 Query 64351 TTGTATTTT 64359 | | ||||| Sbjct 13732849 TCGGATTTT 13732857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499235103755120