Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5812 98.7 9e-16 >seq5812 Length=6624047 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| || ||||| || || ||||| ||||| Sbjct 3076721 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCG 3076662 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 3076661 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076602 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||||| || Sbjct 3076601 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076542 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3076541 TTCACGAAGATCTGCAT 3076525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||||| || || ||||| ||||| Sbjct 3075809 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075750 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || |||||||||||||| ||| || |||| Sbjct 3075749 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 3075690 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||||| ||| Sbjct 3075689 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAAGTC 3075630 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3075629 TTCACGAAGATCTGCAT 3075613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||||| || || ||||| ||||| Sbjct 3076037 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075978 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 3075977 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3075918 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||||| || Sbjct 3075917 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3075858 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3075857 TTCACGAAGATCTGCAT 3075841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||||| || || ||||| ||||| Sbjct 3076265 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076206 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 3076205 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076146 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||||| || Sbjct 3076145 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076086 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3076085 TTCACGAAGATCTGCAT 3076069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||||| || || ||||| ||||| Sbjct 3076493 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076434 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 3076433 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076374 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||||| || Sbjct 3076373 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076314 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3076313 TTCACGAAGATCTGCAT 3076297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475110901231520