Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3928 183 4e-41 >seq3928 Length=19980961 Score = 183 bits (202), Expect = 4e-41 Identities = 175/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||| |||||||| ||||||| || || || ||||| || ||||| || || Sbjct 5933863 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 5933804 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| || |||| |||||| || |||||||||||||| | ||| ||||| | ||||||| Sbjct 5933803 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAC 5933744 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | |||||| ||||| ||||| | || || || | || | ||| | ||| | | Sbjct 5933743 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 5933684 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| |||||||| || || ||||| Sbjct 5933683 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 5933640 Score = 165 bits (182), Expect = 1e-35 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||||| | | | ||||| || |||||||| || ||||| |||||||| | Sbjct 5935451 AACACTGAACGAAGTCGAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 5935392 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||||| || | ||| | |||||||| || || || || ||||| || |||||||| Sbjct 5935391 GGCGGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTG 5935332 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || | || |||| || ||||||||||| || || || || || || | Sbjct 5935331 AGGAGAACATATAGCATTACCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAAGTTCCAC 5935272 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | ||||| || ||||| || | | | ||| || || Sbjct 5935271 CATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACAG 5935212 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| ||||| || ||||| ||||| ||||| || |||||||| || Sbjct 5935211 CTCCATGGCATCAATGTCACCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCC 5935152 Query 9175 T 9175 | Sbjct 5935151 T 5935151 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 10115 GTTCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGT 10174 |||| ||||||||||||| |||| |||| | |||||||| ||||||||| ||| || Sbjct 5933293 GTTCTCTCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGT 5933234 Query 10175 CCTAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTG 10234 | | |||||||| || || ||||| || | || || || ||||||| || |||||||| Sbjct 5933233 CTTGAAAAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTG 5933174 Query 10235 GGGATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATC 10280 |||||| |||| ||| | || | | | || ||| ||||||||| Sbjct 5933173 GGGATCAGGGACAAACTTTCTTCTTAGGAGAAATTTTTCCACAATC 5933128 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| ||| || || || ||| ||| ||| Sbjct 5932687 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 5932628 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 5932627 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 5932568 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || ||||||| || | || |||||| Sbjct 5932567 GGAGGGCTGTCAACCAAATGTGATCTGGCT 5932538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723134561133200