Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5812 143 3e-29 seq4924 125 8e-24 seq2193 98.7 1e-15 >seq5812 Length=6624047 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 3076067 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076008 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || |||||||| ||||| || |||| | ||||||||| | || Sbjct 3076007 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3075948 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| || | | |||||||| | ||||| Sbjct 3075947 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3075888 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 3075887 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 3076295 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076236 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || |||||||| ||||| || |||| | ||||||||| | || Sbjct 3076235 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076176 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| || | | |||||||| | ||||| Sbjct 3076175 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076116 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 3076115 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 3076523 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076464 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || |||||||| ||||| || |||| | ||||||||| | || Sbjct 3076463 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076404 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| || | | |||||||| | ||||| Sbjct 3076403 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076344 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 3076343 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 3075839 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3075780 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || |||||||| ||||| || |||| | ||||||||| | || Sbjct 3075779 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3075720 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | |||||||| | ||||| Sbjct 3075719 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3075660 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || |||| || || || ||||| |||||| Sbjct 3075659 TCCAGGGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || || | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 3076751 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 3076692 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || |||||||| ||||| || |||| | ||||||||| | || Sbjct 3076691 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076632 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| || | | |||||||| | ||||| Sbjct 3076631 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076572 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 3076571 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq4924 Length=6499587 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || || || ||||| || || Sbjct 3090819 GCCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 3090878 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 3090879 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 3090938 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | || | | ||||| || | |||||| Sbjct 3090939 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCAC 3090998 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || ||||||||||||||| Sbjct 3090999 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 3091050 >seq2193 Length=10573696 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||||||||||| ||| || | |||| | || || |||||||| ||| | || Sbjct 4126979 CTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACAAA 4126920 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | ||| |||| || || | | ||| |||||| |||||| ||||| | Sbjct 4126919 GATCGGCCTCTGTTGGTTGG-GGGAATGTTCTTCTTGTCTTGGATCTTGGCCTTGACATT 4126861 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||| ||| || ||||| |||| |||||||| || || |||| || || || Sbjct 4126860 CTCGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 4126801 Query 46582 AAAGATTTGCA 46592 ||||| |||| Sbjct 4126800 GAAGATCTGCA 4126790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564774918642960