Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5812 136 4e-27 seq65597 120 3e-22 seq4361 116 4e-21 seq7793 107 2e-18 seq3210 91.5 1e-13 >seq5812 Length=6624047 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 3075612 AATGCAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3075671 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||| Sbjct 3075672 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 3075730 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || || || |||||||| |||| |||||||||| |||||||| Sbjct 3075731 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACA 3075790 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || || | || ||||| |||| || ||| | ||||| || Sbjct 3075791 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3075839 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| | Sbjct 3075841 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3075900 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3075901 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3075959 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3075960 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076019 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| | ||||| || Sbjct 3076020 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076067 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| | Sbjct 3076069 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076128 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3076129 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076187 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3076188 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076247 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| | ||||| || Sbjct 3076248 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076295 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| | Sbjct 3076297 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076356 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3076357 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076415 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3076416 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076475 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| | ||||| || Sbjct 3076476 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGTGG 3076523 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| | Sbjct 3076525 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076584 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3076585 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076643 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| |||||||| ||||||||| Sbjct 3076644 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAA 3076703 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || ||||| || || Sbjct 3076704 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGGGGAGG 3076751 >seq65597 Length=65395183 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || | |||||| ||||| || | | |||||| ||| Sbjct 13732941 ATGCAGATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 13732882 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | |||| ||||||| ||||| || || || || ||||| Sbjct 13732881 AACACCACTGATAACG-TCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCA 13732823 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || |||| ||||||||||||||||| ||| | ||||| ||| |||||||| Sbjct 13732822 GCAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAA 13732763 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||| || || || | || ||||| |||||||| ||| || Sbjct 13732762 CATTCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTG 13732723 Score = 102 bits (112), Expect = 8e-17 Identities = 166/231 (72%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || | | ||| || || ||||| |||||||| |||| |||||| ||| Sbjct 48054907 ATGCAAATCTTTATGATAACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 48054848 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || | | || || |||| ||||||| || | ||||| || | | ||| Sbjct 48054847 GATGCCACTGAG-AATGGC--AAAGCTAAAATCCAAGATGAGGAGGGCATCCTACCTGAC 48054791 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||| || |||| ||||||||||||||||| || | || ||| ||| ||||||| Sbjct 48054790 CAGTAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATG-GC-CACACTCTCCGACTAC 48054733 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || || | || ||||| |||||||| || || | |||||| Sbjct 48054732 AATATCCAGAAAGAGTCCAC-CTGCACTTGGTGCTTGGTCTG-GGGGCGGC 48054684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || ||| || || Sbjct 11098253 ATGCAGATCTTCGTGAAGACTCTGACAGGCAAGACCATCACACTTGAGGTCAAGTTCAGT 11098312 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | |||| ||||||| ||||| || | || | | | ||| Sbjct 11098313 GACACCACTGACAACA-TCAAAGCTAAAATCCGAGACAAGGAAGACATCTCACCTGGCCA 11098371 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC-GCACCCTCAACGACTACA 38421 ||| | || |||| || ||||||||||||| ||| ||| |||| || ||||||| Sbjct 11098372 GCAGTGTCTGATTTTTGCCCGCAAACAGCTGGAGGAC-AGCTGCACTTTCTCAGACTACA 11098430 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 | ||||| || || | || ||||| |||||||| ||| |||| Sbjct 11098431 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGAG 11098473 >seq4361 Length=21435851 Score = 116 bits (128), Expect = 4e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || | |||||| |||||||| ||| ||| || ||| Sbjct 2916624 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 2916565 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| |||| || ||||| ||||| || || | ||||| Sbjct 2916564 GACACCATCGAAAACG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCA 2916506 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCA--CCCTCAACGACTAC 38420 || | || | || ||||||||||||||||| | | |||| |||||| ||||| Sbjct 2916505 GGAGGGTCTGAGTTTTGCGGGCAAACAGCTGGAGAATGGCCGCACTCCCTCA--GACTAT 2916448 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| || || | || ||||| |||||||| ||| || | || ||| Sbjct 2916447 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGC 2916397 >seq7793 Length=19070987 Score = 107 bits (118), Expect = 2e-18 Identities = 149/203 (73%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-TGCAAACGCTTAAAGAAAA 38329 ||||| |||||| | |||| |||||| ||| |||| | || ||||| | |||| || Sbjct 18919670 GGCAAGACCATCGCACTCGAGGTCGAGCCCAGTGACACCACTGAAAACG-TCAAAGCTAA 18919728 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||||| ||||| ||||| || || | ||||| ||||| || |||| ||||||||||| Sbjct 18919729 AATCCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACA 18919788 Query 38390 GCTGGACGACGAGC-GCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATT 38448 |||||| ||| ||| |||| ||| ||||| || ||| | || | || ||||| | Sbjct 18919789 GCTGGAAGAC-AGCTGCACTCTCTCAGACTAAAA----CAACAAGAGTCCACTCTGCACT 18919843 Query 38449 TGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| | | || |||||| Sbjct 18919844 TGGTGCTTCTTCTGCAGGGCGGC 18919866 >seq3210 Length=13039658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || | || | || ||||||||| | || || || ||| || Sbjct 10166944 TGCAGATCTTCGTGAAGACCTTGACCGAGAAGACCATCACCCTGGAGGTGAAGCCCAGCG 10166885 Query 38305 ACAGCGTGCAA-ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | ||| || | | || |||| || |||||||| || ||| | || ||| Sbjct 10166884 ACACCATTGAGCACG-TTGAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGATCAA 10166826 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| || | || | ||||||||||| || | | || ||| |||||||||| Sbjct 10166825 TAGAGGCTGATCTTTGCCAGGAAACAGCTGGAAGATGGACACATCCTGTCCGACTACAAC 10166766 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||||| || || | || ||| | |||| || |||||||| || Sbjct 10166765 ATCCAGAAAGAGTCTACTCTGTACCTGGTCCTTCGTTTGAGGGG 10166722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499762670808320