Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1028 141 4e-28 seq1040 136 2e-26 seq12044 109 2e-18 seq10551 100 1e-15 seq65591 98.7 4e-15 seq13474 91.5 6e-13 seq14107 89.7 2e-12 seq65597 86.0 2e-11 >seq1028 Length=691532 Score = 141 bits (156), Expect = 4e-28 Identities = 346/524 (66%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | | | ||||| | Sbjct 453776 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCT 453835 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | | ||| | ||| || ||| || || Sbjct 453836 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAACCT 453895 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | | || || ||||| || | ||| |||| ||||| ||||| || ||| Sbjct 453896 AAGGTGCTGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCT 453955 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||||||||| || || || || | | | || || || || || Sbjct 453956 ATGGTACTAACTAAAATGAAGGAGACTGCTGAGGCTTTTTTAGGCCACCCTGTCACCAAT 454015 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || ||||||||||| | ||||| || || || || |||||| Sbjct 454016 GCTGTGATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 454075 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | ||||| | ||||||| |||||||| ||||| ||||| | Sbjct 454076 GGTGTGATTGCGGGTCTCAATGTGTTAAGAATTATCAATGAACCCACAGCTGCTGCCATT 454135 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | | | |||||| | Sbjct 454136 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTACTGATCTTTGATCTG 454192 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || | || | || || |||||| | ||||| |||||| Sbjct 454193 GGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGATGATGGGATTTTTGAGGTAAAG 454252 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| || || || | || || || || |||| || Sbjct 454253 GCCACAGCTGGGGACACCCACTTGGGTGGAGAGGACTTTGACAA 454296 >seq1040 Length=2026387 Score = 136 bits (150), Expect = 2e-26 Identities = 388/584 (66%), Gaps = 28/584 (5%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----G 451951 |||| ||||| || || || |||||||| | |||||||| ||||| | | | | Sbjct 1123312 ATGATATTGTCCTGGTGGGTGGTTCTACCCATATTCCTAAGATTCAGAAACTTCTACAGG 1123253 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| | |||||| | | ||||||| | || |||||||| |||||||| Sbjct 1123252 ACTTCTTTAAT----GGAAAAAAGTTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCT 1123197 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAGGAGA 452070 | |||||| || || || ||||| || ||| | || || || |||||| | ||| Sbjct 1123196 TTTGGTGCAGCTGTCCAGGCAGCCATCCTATCTGGAGACAAATC-TGAAAATGTTCAAGA 1123138 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||| | || |||| || ||||| | ||||| | ||||| ||||| ||||| || Sbjct 1123137 TTTGCTGCTGTTAAATGTTACTCCTCTTTTCCTTGGCATGGAAACTGCTGGCGGAATCAT 1123078 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 |||| | ||||| | ||| | |||| | || ||| || || || | ||| Sbjct 1123077 GACTGCCCTCATTAAGCACAATACTACCATTCTTACCAAGCAGACACAGACCTTCACTAC 1123018 Query 452191 AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGA- 452249 || |||||| || | |||| ||||| || | |||||| || | || |||| Sbjct 1123017 CTACTCTGCTAACCAGCCTGCTGTACTCATTCAGGTTTATGAAGGTGAGTGGGCCATGAT 1122958 Query 452250 CACGAGATAATAATAAACTAGGAGAATTT--ACTCTTTCAAACATTCCTCCTATGCCAAG 452307 || | ||||| || || || | ||| |||| | | | | |||||| || || Sbjct 1122957 CAAG-GATAACAACCTGCTTGGCAAGTTTGAACTCAT--AGGCGTACCTCCTGCACCTAG 1122901 Query 452308 GGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAG 452367 || |||||| ||||||||||| | |||| | ||||| ||||| || || ||||| Sbjct 1122900 TGGTGTTCCTCAGATTGAAATTACTTTTGATATCGATGCTAATGGCATCCTCAATGTCTC 1122841 Query 452368 TGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAAC 452425 ||| || || || | || || ||| |||| ||||||| || |||||||| || Sbjct 1122840 TGCTGTGGATAAGAGCA--CGGGAAACGAGAACAAAATTATCATCACTAATGACAA---- 1122787 Query 452426 CGTTTATCT----AAAGAAGATATTGAAAAAATGGTAGATGAAG 452465 | || ||| || ||||||||||| | ||||| | |||| Sbjct 1122786 GGGTTGTCTCAGCAAGGAAGATATTGAGCACATGGTCCAAGAAG 1122743 Score = 127 bits (140), Expect = 8e-24 Identities = 268/399 (67%), Gaps = 3/399 (1%) Strand=Plus/Minus Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 ||||||| | || || || || || |||| ||| ||| || || | || |||| ||| Sbjct 1123998 TCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCGTCTAGGGT 1123939 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 | | || || ||||| || | |||||| || |||| | |||| |||| | Sbjct 1123938 TTTGACAAAGATGAAGGATATTGCAGAAGCCTACCTTGGGAAGACCATTACAAATGCCAT 1123879 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 || || || || ||||| |||||||| | || |||| || ||||||||||| ||| Sbjct 1123878 CATGACAGTACCTGCTTACTTCAATGACTCTCAGTGGCAGGCTACTAAAGATGCTGGAAT 1123819 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 |||||||||| | ||||| | | ||||||| ||||| || || | |||||| | || || Sbjct 1123818 TATTGCTGGTCTCAATGTACCTAGAATTATCAATGAGCCAACTTCTGCTGCTATTGCTTA 1123759 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| ||| || ||| | || ||| |||| | | | ||||| || || || Sbjct 1123758 TGGCTTAGACAA---AAAGGTTGGAGCTCAAAGAAATGTGCTGATCTTTGACTTGGGAGG 1123702 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || | || || ||||||||||| | || |||| || | || Sbjct 1123701 TGGCACTTTTGATGTGTCAATTCTCACAGTTGAAGATGGGATTTTCAAAGTGAAATCTAC 1123642 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || ||||| ||| || ||||| |||| || Sbjct 1123641 AGCTGGGGACACTCACTTAGATGGAGAAGACTTTGACAA 1123603 >seq12044 Length=10514555 Score = 109 bits (120), Expect = 2e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 1863228 GTTACTCATGCAGTTGTTACTGTACCGGCCTATTTCAATGATGCCCAACGCCAGGCAACC 1863169 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 1863168 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 1863116 >seq10551 Length=27482606 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || ||||| || |||||| | | Sbjct 16152181 ATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTTG 16152240 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||| ||||||||||||||| Sbjct 16152241 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCAG 16152300 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | | || | || || ||||| ||||||||| | ||| || | || || || Sbjct 16152301 CAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAAC 16152360 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 16152361 ATTCAAAAGGAGTCCACGCTTCA 16152383 >seq65591 Length=11041708 Score = 98.7 bits (108), Expect = 4e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACT-GGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || ||||| || | || || || |||||||| | |||||| | || Sbjct 2177591 ATGCAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGTTGAACCCTC 2177532 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || |||| || || || || || ||||||||||||||||||||| |||| Sbjct 2177531 AGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCATCA 2177472 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||||| ||||||||| | ||| | ||||| | Sbjct 2177471 GCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCTTGTCTGATTACAG 2177412 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 2177411 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2177373 >seq13474 Length=40992597 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || | || || ||||| | ||| || |||||| | || Sbjct 16257276 ATGCAGATTTTCATGAAAACCCTTATAGGGAAGACTATCATTCTCGAGGTTGAAGCTTCA 16257335 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | || | ||| | | || || || || |||||||||||||||||| ||||||| Sbjct 16257336 GTTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGATCAG 16257395 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || | || | || || ||||| ||||||||| | || ||| | || || || Sbjct 16257396 CAAAGATTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 16257455 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 16257456 GTTCAAAAGGAGTCCACTCTTCA 16257478 >seq14107 Length=18892604 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||| ||||| || || || ||||| ||||||| ||||| | ||||||||| Sbjct 6571343 CAGGCCACTAAGGATGCTGGCCAGATAGCTGGACTAAATGTGCTTCGGGTGATTAATGAA 6571402 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || || || ||||||||||| ||||| |||| ||||| |||| Sbjct 6571403 CCCACGGCTGCTGCTCTAGCCTATGGTCTAGACAAATCGGAAGA 6571446 >seq65597 Length=65395183 Score = 86.0 bits (94), Expect = 2e-11 Identities = 167/245 (68%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 37597923 TGCAATCTCTGGCACTAGGGGCTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 37597980 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || || | | ||| | ||| | | Sbjct 37597981 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGAGCACTGTGATCTTAGACTATTGAGA 37598040 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || || ||||||||||||||||||| ||| ||||| || ||| Sbjct 37598041 CAAATGCTGCCATTACTATTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 37598100 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | Sbjct 37598101 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTCGA 37598160 Query 96287 TAGGG 96291 ||||| Sbjct 37598161 TAGGG 37598165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974057859312584