Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1040 188 5e-42 seq1028 178 1e-38 seq12044 114 1e-19 seq63014 113 3e-19 seq14553 100 2e-15 seq10175 98.7 8e-15 >seq1040 Length=2026387 Score = 188 bits (208), Expect = 5e-42 Identities = 789/1227 (64%), Gaps = 29/1227 (2%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| || || || || ||||| | ||||| |||||||||| |||| | || | Sbjct 1123075 GTCATGATTCCGCCAGCAGTTTCCATGCCAAGGAAAAGAGGAGTAACATTTAACAGCAGC 1123134 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||||| |||||| | | ||| || || ||||| || | ||| |||||| Sbjct 1123135 AAATCTTGAACATTTTCAGATTTGTCTCCAGATAGGATGGCTGCCTGGACAGCTGCACCA 1123194 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 | |||||||| |||||||| || | | | ||| | ||||| ||||| || || | Sbjct 1123195 AAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAACTTTTTTCCATTAAAGAAGTCC 1123254 Query 517676 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||||| ||| | |||||||||| | | || || || || | ||||| ||||| Sbjct 1123255 TGTAGAAGTT-TCTGAATCTTAGGAATATGGGTAGAACCACCCACCAGGACAATATCATG 1123313 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCG 517793 | ||| || || || || || | |||| | ||||| || || |||| || | | Sbjct 1123314 GATCTGGGACTTGTCAAGCTTCGCATCCTACGGGACTTTCTCTACAGGGTCCAGGGTGCC 1123373 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 | ||| | ||| ||| |||||||| |||| || || | | | || | | Sbjct 1123374 ATGGAAA-AGGTCAGAATTCAGTTCTTCAAATTGGGCATGGGTGATAAAGGTATAGAAGT 1123432 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 ||||| |||| | | |||||| ||||| | | || || ||| | || | || Sbjct 1123433 CAATTTCTTCATAGAGCAAATCAATCTCAATACTGGCCTGGGTGTTGGAAAAAAGGGTAC 1123492 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTTTTGCTGATTGATTCAAA 517972 |||||||||||| | || || | | | | | || | ||| | | | | | Sbjct 1123493 ACTTAGCACGTTCAGAAGCAGTACAGGAGCATTGAACAGCCCTTTTATTCTC-ACTGACG 1123551 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAA 518030 || | |||| || | ||| || ||| ||| | | ||| | || | | || |||| Sbjct 1123552 TCCTTCTTATGCTTGCACTTAAACTCTGCAATAAA--ATGGTTGACCATTCAGTTGTCAA 1123609 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | ||||| || | || | ||| | || | |||| | | |||| ||||| ||||||| Sbjct 1123610 AGTCTTCTCCATCTAAGTGAGTGTCCCCAGCTGTAGATTTCACTTTGAAAATCCCATCTT 1123669 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | |||||| || ||||| |||| ||||| || || ||||| Sbjct 1123670 CAACTGTGAGAATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAGATCAGCACATT-- 1123727 Query 518151 TTTCTTTGTCTTGG----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 |||||| | ||||| || | ||||| |||| |||||||| |||||| ||| Sbjct 1123728 --TCTTTGAGCTCCAACCTTTTTGTCTAAGCCATAAGCAATAGCAGCAGAAGTTGGCTCA 1123785 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || |||||||| ||||| ||||||||||| |||| ||||||||||| || || | Sbjct 1123786 TTGATAATTCTAGGTACATTGAGACCAGCAATAATTCCAGCATCTTTAGTAGCCTGCCAC 1123845 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || || || || || || ||||| || || || | ||||| || | || |||| Sbjct 1123846 TGAGAGTCATTGAAGTAAGCAGGTACTGTCATGATGGCATTTGTAATGGTCTTCCCAAGG 1123905 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA- 518385 || || ||| | | ||||| || | |||| | | || || | | ||||| | Sbjct 1123906 TAGGCTTCTGCAATATCCTTCATCTTTGTCAAAACCCTAGACGACACCTCCTCTGGATAG 1123965 Query 518386 ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 518445 | | | ||| | ||| ||| ||||| | | || | | || ||| | Sbjct 1123966 AAACTTTTTGTCTCTCCCTTG-TATTCTACTT-GACCTTGGGCCTGCCAGCATTATTCAC 1124023 Query 518446 AACTTTAAATGGCCAGTATTTCATATCTGATT---GAACACTTTGGTCATTAAAATCTCT 518502 || || |||| | ||| |||| || | |||| | ||| |||||| | Sbjct 1124024 CACCAGGAAGGGCCGATGCTTCGTATCAGACTAGGCAACAGT---ATCA-CCAAATCTAT 1124079 Query 518503 -ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 ||||| | ||||| | ||||||| ||| ||||| || || ||||| |||||| | Sbjct 1124080 GTCCAATCAGGCGTTTGGTATCAAAAGCAGTGTTGGTGGGGTTCATTGCCACTTGATTCT 1124139 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 | || ||||| || |||| || || | || ||||| | ||||| ||| | || | Sbjct 1124140 TTGCAGCATCACCTATCAATTGCTCCATATCAGTAAAGGCCACATAACTTGGCGCGGTTC 1124199 Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 518681 | || || | ||| || ||||| ||||| |||| | || || | ||||| |||||| Sbjct 1124200 GGTTTCCCTAATCGTTGGCAATTATTTCCACTTCTCTATGCTGGAAGACACCCACACAAG 1124259 Query 518682 TAAAAGTTGTTCCTAAATCAATACCAA 518708 | || || || | |||||| |||| Sbjct 1124260 AGTAGGTGGTGCCGAGATCAATGCCAA 1124286 >seq1028 Length=691532 Score = 178 bits (196), Expect = 1e-38 Identities = 455/685 (66%), Gaps = 6/685 (1%) Strand=Plus/Minus Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 |||| | || |||||||| ||||| ||| | | || || | || ||||| || | Sbjct 454343 TTTTGTGCTTCCTCTTGAATTCTTCCACAAAGTGACTCACCAGCCTGTTGTCAAAGTCCT 454284 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || ||||| | || | || | || || |||| | |||| ||||| || | | Sbjct 454283 CTCCACCCAAGTGGGTGTCCCCAGCTGTGGCCTTTACCTCAAAAATCCCATCATCTATGG 454224 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TC 518154 || | | |||||| || || ||||||| |||||| || ||||||| || | || Sbjct 454223 TCAGGATGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGTACATGTCGCTCTC 454164 Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 || | || ||| | | ||| ||||| |||| |||||||| || |||||||| ||||| Sbjct 454163 CCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCTGTGGGTTCATTGATAAT 454106 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 ||| || ||||| ||||| ||||| |||||||| || ||||| || | ||| || || Sbjct 454105 TCTTAACACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTC 454046 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 || ||||| || || ||||| || || |||| || || | || | | |||| Sbjct 454045 ATTGAAATAGGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCTAAAAAAGCCTC 453986 Query 518335 TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTT 518394 || || | ||||||||| ||| | ||| || || |||| || ||| | | |||| Sbjct 453985 AGCAGTCTCCTTCATTTTAGTTAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTT 453927 Query 518395 GGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAA 518453 | || || || || || | | ||||| || |||| || |||| || Sbjct 453926 TTTTCTCCCCTTTGTAGGACACCAGCACCTTAGGTTTGCCTCCTTCATTGATTACTTGAA 453867 Query 518454 ATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATC 518513 | ||||| ||||||||||||||| || | |||||||| | ||| ||||| | | Sbjct 453866 AAGGCCAAAGTTTCATATCTGATTGCACTACAGGATCATTAAATTTTCTGCCAATCAGAC 453807 Query 518514 GTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTC 518573 |||| |||||||| | ||| || ||||| || || | || | ||||| ||||| | Sbjct 453806 GTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCGGCATCCC 453747 Query 518574 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 | || || | || || || || || | || || || || || || || || || | Sbjct 453746 CGATGAGCCGCTCGGTGTCAGTGAAGGCCACGTAGCTAGGGGTGGTACGGTTGCCCTGGT 453687 Query 518634 CATTCGCAATAATTTCAACTTTACC 518658 | || || || || || || || || Sbjct 453686 CGTTGGCGATGATCTCCACCTTGCC 453662 >seq12044 Length=10514555 Score = 114 bits (126), Expect = 1e-19 Identities = 216/312 (69%), Gaps = 18/312 (6%) Strand=Plus/Plus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCT 517150 |||| |||||||||||||| ||| ||||| || ||| || ||| |||||| | ||| Sbjct 1861035 ATAACTTTCTAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTATCTTCCTCT 1861092 Query 517151 TCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCC 517206 |||| | || ||| || ||| ||| || ||||| | || |||| || || Sbjct 1861093 GCAAACTTTTCAGCATCATTAACCATCCTTTCAATCTCTTCGGGTGTCAGGCGATTTT-- 1861150 Query 517207 GCGATTATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGT 517263 | | ||| ||||| || || || || |||||| ||| ||| || | || || Sbjct 1861151 --GGTCATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGT 1861205 Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 ||| |||||| ||||| |||| | ||||| ||||||||||| || ||||| || | Sbjct 1861206 CACTCGAAGAATGCCATTCACATCTATCTCAAAAGTGACTTCAATCTGTGGGACTCCACG 1861265 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 ||||||| ||||| || || || ||| ||||||||| || ||| ||||| || | Sbjct 1861266 GGGAGCAGGAGGGATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAG 1861325 Query 517384 TTTTCGTTCACC 517395 ||||||||| Sbjct 1861326 GGGTCGTTCACC 1861337 >seq63014 Length=3126935 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| ||||||||||||||| ||||| |||||||| | ||| Sbjct 2456583 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTAAGTACA 2456642 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 2456643 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGCCGCTGAGAGTCATTGAAGTAA 2456702 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | || |||| Sbjct 2456703 GCAGGTACTGTGACCACAGCAT 2456724 Score = 102 bits (112), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||| |||||||| || | | | | ||| | | ||| |||||||| Sbjct 2455931 GCACCATAAGCGACAGCCTCATCAGGGTTGATACTCTTATTCAACTCTTTTCCATTGAAG 2455990 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | ||||||| ||| | |||||| ||||| | || || || || | ||||| Sbjct 2455991 AAGTCCTGTAGAAGTT-TCTGAATCTTAGGGATACGGGTAGAACCACCCACCAGAACAAT 2456049 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || || | || || || || || || | |||| | ||||||| || || || || Sbjct 2456050 ATCGTGGATTTGGGACTTGTCGAGCTTCGCATCCCGAAGGGCTTTTTCTACAGGGTCCAG 2456109 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | || | ||| | | | |||||| ||| || | || | || | || Sbjct 2456110 GGTGCCACGGAAAAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTGATAGAGGTATA 2456169 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 2456170 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTACTGGAAGAAAG 2456229 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTG--CTGATT 517964 | ||| ||||||||||| || || || | || | || | || ||||| || | | Sbjct 2456230 GGTACGCTTAGCACGTTCGCAAGCAGTGCGGAGACGACGGACAGCCCTTTTGTTCTCACT 2456289 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 518022 ||| || | |||| || | ||| || ||| ||| | | ||| | || | || Sbjct 2456290 GATG----TCCTTCTTATGCTTGCGCTTAAACTCTGCAATAAA--ATGGTTGACCATTCG 2456343 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| ||||| || || || | || | ||| | |||| | | |||| ||||| Sbjct 2456344 GTTGTCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTCACTTCGAAAAT 2456403 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| | | || | |||||| || ||||| |||| ||||| || || Sbjct 2456404 TCCATCTTCAATTGTGAGAATCGACACATCAAAAGTGCCACCTCCCAAGTCAAAGATCAG 2456463 Query 518143 TACATTCATTTC 518154 ||||| |||| Sbjct 2456464 CACATTTCTTTC 2456475 >seq14553 Length=23333051 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| |||||||| ||||||||||| || ||| | || || ||| | Sbjct 1935257 TGTACACTTATCCTGACCGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 1935316 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| |||||| ||||| |||||||| |||||||||||| | | |||||| | Sbjct 1935317 GTGGTTGGGAGAGATAGATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 1935376 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 1935377 GAAGCTTCTCATAAA 1935391 >seq10175 Length=28871421 Score = 98.7 bits (108), Expect = 8e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 9551443 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCAGACATTCGCAAAGTCAT 9551384 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 9551383 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCG 9551324 Query 367113 TGATGGA 367119 |||||| Sbjct 9551323 CGATGGA 9551317 Score = 98.7 bits (108), Expect = 8e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 9554668 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCAGACATTCGCAAAGTCAT 9554609 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 9554608 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCG 9554549 Query 367113 TGATGGA 367119 |||||| Sbjct 9554548 CGATGGA 9554542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777567211160188