Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2426 87.8 2e-12 seq5818 82.4 9e-11 >seq2426 Length=324192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || ||| | ||||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 170016 TGGTACGCCATTATTGAGTCTCAGACTGAGACAGGTACCCCATACATGCTCTACAAAGAT 169957 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 ||||||| | |||| || || |||| |||| ||||| | |||||| ||| Sbjct 169956 TCCTGTAATCGGCAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGTGT 169897 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 |||||||| | || | ||| |||||||||| Sbjct 169896 ACAGAAATAGTAGAGTATACTAGCAAAGATGAG 169864 >seq5818 Length=23789964 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 102546 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 102605 ||||||||||||||||||||||||||| || || ||||| || |||||||| || ||| Sbjct 4867632 AATCCATTTGACTTCATGGAGAACATTTCACTGGAAGGGAAAACTAACTTCTTTGAGAAG 4867691 Query 102606 AGGGTTGGGGACTATGGCAAGATGG 102630 || || || || ||| ||||||| Sbjct 4867692 AGAGTGGGCGAGTATCAGAAGATGG 4867716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620233406750560