Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4924 161 2e-34 seq5812 145 2e-29 seq65591 114 3e-20 seq5350 107 4e-18 seq3210 98.7 2e-15 seq13474 95.1 3e-14 seq65597 91.5 3e-13 seq7793 87.8 4e-12 >seq4924 Length=6499587 Score = 161 bits (178), Expect = 2e-34 Identities = 165/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| ||||| |||||||| | |||||| | |||||||| Sbjct 3090838 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3090897 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || |||||||| || |||||||| || || || Sbjct 3090898 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGG 3090957 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||||||| ||||| | ||| Sbjct 3090958 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCCACTTCCAGGGTGATGGTC 3091014 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 3091015 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 3091048 >seq5812 Length=6624047 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 3075834 TCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGT 3075775 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 3075774 GCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3075715 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| || || |||||||||||| |||||||| ||||| || || Sbjct 3075714 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 3075655 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | ||||| || |||||||| || ||||| | |||||| Sbjct 3075654 GGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 3076062 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGT 3076003 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 3076002 GCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3075943 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 3075942 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 3075883 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 3075882 GGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 3076290 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGT 3076231 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 3076230 GCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3076171 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 3076170 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 3076111 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 3076110 GGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 3076518 TCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGT 3076459 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 3076458 GCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3076399 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 3076398 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 3076339 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 3076338 GGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| |||| || || | || ||||| Sbjct 3076733 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3076674 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| || ||||| || Sbjct 3076673 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076614 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| ||||| || ||||| | ||||| Sbjct 3076613 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3076554 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 3076553 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq65591 Length=11041708 Score = 114 bits (126), Expect = 3e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||||| |||||||||||||| |||||||| ||||||| | ||||| | | Sbjct 2177373 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGT 2177432 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || |||||||||| ||| || | |||||||| ||||| Sbjct 2177433 -CCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2177491 Query 195042 TTTGTCTTGAATTTT 195056 || || || || || Sbjct 2177492 CTTATCCTGGATCTT 2177506 >seq5350 Length=2239624 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| | |||||||||||| |||||||||||||| || | ||||| Sbjct 1454510 AGTCTCAACACAAGATTAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTATAT 1454451 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || |||| || | ||| || || |||||||| ||||| Sbjct 1454450 CCATCTTCCAGTTGCTTGCCAGCAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 1454391 Query 195043 TTGTCTTGAATTTT 195056 || || || || || Sbjct 1454390 TTATCCTGGATCTT 1454377 >seq3210 Length=13039658 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || |||| ||||| |||||||| || || ||||| |||| || || | ||| |||||| Sbjct 10166737 ACCAGGTACAGAGTAGACTCTTTCTGGATGTTGTAGTCGGACAGGATGTGTCC-ATCTTC 10166795 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || | || ||||| || | | ||| || || || ||||| ||||| ||||| Sbjct 10166796 CAGCTGTTTCCTGGCAAAGATCAGCCTCTATTGATCAGGGGGGATGCCCTCTTTATCTTG 10166855 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || |||| ||||||||||| | | ||| ||| || ||||| | ||| Sbjct 10166856 GATCTTGGCCTCAACGTGCTCAATGGTGTCGCTGGGCTT--CACCTCCAGGGTGATGGTC 10166913 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 || | ||||| || || ||||| | |||| Sbjct 10166914 TTCTCGGTCAAGGTCTTCACGAAGATCTGCA 10166944 Score = 84.2 bits (92), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| ||||| |||| ||| || || ||||||||||| |||||||| || || |||| Sbjct 10167158 CTTTCTGAATGTTGT---CGGACAGGGTGCTCCCATCTTCCAGCTGCTTCCCGGCAAAGA 10167102 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || | || ||||| || || ||||| ||||||||||| || |||||| |||| Sbjct 10167101 TCAGCCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTGGGCCTTGGCCTTGACATTCT 10167042 Query 195071 CAATGGT 195077 ||||| Sbjct 10167041 TGATGGT 10167035 >seq13474 Length=40992597 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||| |||||||||||||| ||||||| ||||| || | |||| || | Sbjct 16257493 AGTCTCAACGCAACATGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAG-GTACG 16257435 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||| | | || ||| || || | |||||| ||||| Sbjct 16257434 TCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTC 16257375 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || | || | ||| ||| || || || | Sbjct 16257374 CTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAAT 16257315 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||| | | ||||| | ||| | ||||| Sbjct 16257314 GATAGTCTTCCCTATAAGGGTTTTCATGAAAATCTGCAT 16257276 >seq65597 Length=65395183 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | | ||| | | || || ||||| Sbjct 11098456 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGCAGCTGTCCTCCAGCTG 11098397 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || | || || || || | || ||| | || | ||| |||| |||||| | ||||| Sbjct 11098396 TTTGCGGGCAAAAATCAGACACTGCTGGCCAGGTGAGATGTCTTCCTTGTCTCGGATTTT 11098337 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||| ||| ||| |||||| | |||||| || ||||| || | ||||| ||| Sbjct 11098336 AGCTTTGATGTTGTCAGTGGTGTCACTGAACTT--GACCTCAAGTGTGATGGTCTTGCCT 11098279 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||| || ||||| | ||||| Sbjct 11098278 GTCAGAGTCTTCACGAAGATCTGCAT 11098253 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| ||||| ||||| || | ||||| | || || ||||| Sbjct 13732738 GTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTCCAGCTG 13732797 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || | || ||||| | || |||||||| |||||| | ||||| Sbjct 13732798 TTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCGGATTTT 13732857 Query 195057 TTGCTTGACGTTCTCAATGGTGT 195079 |||||||| ||| |||||| Sbjct 13732858 AGCTTTGACGTTATCAGTGGTGT 13732880 >seq7793 Length=19070987 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||||| ||| || || || | ||||| | | ||||| ||||| Sbjct 18919842 GTGCAGAGTGGACTCTTGTTG----TTTTAGTCTGAGAGAGTGCAGCTGTCTTCCAGCTG 18919787 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || || ||||| || |||||||| ||||| Sbjct 18919786 TTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 18919727 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||| ||| ||||||| Sbjct 18919726 AGCTTTGACGTTTTCAGTGGTGTC 18919703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108549109145666