Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5818 120 3e-22 seq2426 116 4e-21 seq10551 84.2 2e-11 >seq5818 Length=23789964 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | |||||||||||||| | ||| | Sbjct 4866334 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 4866275 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 4866274 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 4866215 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 4866214 CGACAACACGTTCTCC 4866199 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||||||||||||| || || ||| |||||||| Sbjct 4867769 TTAGAAGTCGGCATCCAAGGTAAAAGAATTCTCTG--TTGGACCGGACATCACTCCCATC 4867712 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| ||| | ||||| || |||||||| |||||||| || || | ||| || Sbjct 4867711 TTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAATGTTC 4867652 Query 18730 TCCATAAAATCAAATGGATTTT 18751 ||||| || ||||||||||||| Sbjct 4867651 TCCATGAAGTCAAATGGATTTT 4867630 >seq2426 Length=324192 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||||||||| || || Sbjct 155634 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 155693 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| ||| ||||||||||| || |||||||| | |||| | ||| ||| Sbjct 155694 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 155753 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 155754 TTTCTTATACCATA 155767 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 153435 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 153494 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||| ||||||| | | || | Sbjct 153495 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAACTGCCATTTTGAGAACAGTTT 153554 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 153555 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 153603 >seq10551 Length=27482606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || ||| |||| Sbjct 20340218 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATATTTTCC 20340159 Query 18733 ATAAAATCAAATGGATTTT 18751 |||||||| || ||||||| Sbjct 20340158 ATAAAATCGAAGGGATTTT 20340140 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 20333804 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 20333745 Query 19045 AACCAGAATATAGAAGCAAA 19064 ||||||||||||| |||||| Sbjct 20333744 AACCAGAATATAGCAGCAAA 20333725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561647884836720