Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq13090 129 5e-25 seq7792 96.9 3e-15 seq7281 84.2 2e-11 >seq13090 Length=34591212 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || ||||| || ||||| || | ||||||||||||||| ||||| Sbjct 25833564 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25833505 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| | ||||||||||| ||||| || || ||||| || | | Sbjct 25833504 ACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 25833445 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | ||| ||||| ||||| || |||||||| Sbjct 25833444 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATGAG 25833401 >seq7792 Length=927264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 398/624 (64%), Gaps = 34/624 (5%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||||| || || || | || | ||| | ||||| ||||| || || ||| || Sbjct 794812 GGAAAGGC-CTTGGTTCTCGCTGAAACTGCATTTTCAGTGGTTCAGTGTCATTCAGATAA 794870 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGC 29885 | ||| || ||||| | || || ||||| || || || ||| |||| ||| ||| | Sbjct 794871 ATGTGTGCATCTCCTAAAGTATGTACAAAGTCACCTGGCTTCCGGCCCA-TGATGTGTGT 794929 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||| | | | || ||||||||||||||||| |||||| | || || |||| ||| Sbjct 794930 GATCATGTAGGAGGGCAGGGAGTAGCTGGCGATGTTGAAGGGTGCTCCCAGGCCCAGGTC 794989 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 | | |||||||| |||| |||| ||||| || | Sbjct 794990 TGCTGGCCTCTGGT-------TCACG------------------CGTAGAACTGGCAAAG 795024 Query 30006 GGTGTGGCACGGAGGAAGAGCCATG--AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 || |||||| | || || || ||| | |||| | ||| | |||| || | Sbjct 795025 GGCATGGCACCAAACTAGGGCTGTGAAAGGATGA--CCTTTCCGATTCTAAGCGCGCAGG 795082 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || ||||| | || | ||| | | |||||||| || || Sbjct 795083 ATGATTCTTCTGTCATCACGGTTGGTTTCGAACATGTCAATCACCTTTTGCAGTTGGTCT 795142 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || || || || ||| || || |||| ||||| | |||||||||||| Sbjct 795143 ACTCCTTGACCTGAATAACCTGAATCTATATCTTTGTATTCTGCCTCAAAATGCCTCCAC 795202 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 || || || | | | || | ||| || |||| ||| ||| ||| ||| Sbjct 795203 TGAAAGCCATTAATTAGGCCTAAGTCCCCTTCTTTTCTGCAGGAGAATCCCAGGCCTTCC 795262 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 | ||||| ||| | ||||| ||||||| | || | || || || ||||| Sbjct 795263 AGGAAGTCGTAGGACTCATTGGCATCCCAGAATCTCACTTCTTTGGACGACAGTTCTTTA 795322 Query 30304 GAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 | |||||| | |||| || |||||||||| |||||||| || ||||||| || || Sbjct 795323 GCATTTGTGTATTCCTC-GATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAATAC 795381 Query 30363 CCTCTTGGTCGTGAGGAGGGGAAA 30386 | || | || || || ||||| Sbjct 795382 ACGTTTAGGTGTCAGCAGAGGAAA 795405 >seq7281 Length=49932807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 ||||| || || ||||| |||| || || ||||| | | ||||| |||||| | ||| Sbjct 13780830 TTAAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTTGGGA 13780889 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCA 112195 ||||||||||| ||||| |||||||| ||||||| Sbjct 13780890 ATGGAGAACCAGGTCTTCCTACCCATAATCACCA 13780923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408290920188854