Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12381 178 2e-39 seq847 125 1e-23 seq12938 84.2 4e-11 >seq12381 Length=1637889 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 216549 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 216490 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || | || || |||||||| || | |||||| |||||| Sbjct 216489 TCCCGGAGGAGGCCGGCAGTGCTCGAGAGCCCTGCGTTCTCTGCCTTGAGTGTCTTCACC 216430 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 216429 TTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCAGC 216370 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 216369 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 216310 Query 241625 GAC 241627 ||| Sbjct 216309 GAC 216307 >seq847 Length=4940370 Score = 125 bits (138), Expect = 1e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| || ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1458179 AGGACCTTTTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAG- 1458237 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || | ||| ||||||||||||||| || |||| |||||| |||| Sbjct 1458238 -CTCCGTATTCTGGCTCTTAAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 1458296 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | ||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||| Sbjct 1458297 GCTTGCGTTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 1458356 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || || || ||||||||||| || ||| Sbjct 1458357 TGATACGCTCTTGTGTGTCCATGTCGATGGGCGAC 1458391 >seq12938 Length=37922413 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| |||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 9905331 TTCACTTTTTCCTCCAGCCTGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 9905390 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || || ||| |||||||||| Sbjct 9905391 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCTTGGGACTCCATGTCG 9905450 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 9905451 ATAGGCGAC 9905459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930768966392320