Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq12054 315 8e-81 seq1718 170 2e-37 seq65597 104 3e-17 >seq12054 Length=25135041 Score = 315 bits (348), Expect = 8e-81 Identities = 668/992 (67%), Gaps = 15/992 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| ||| || || |||| |||||||| || || | ||| | |||| ||| || || Sbjct 22267929 TGTCTCAGGTGCTCATCCAAACATTGGATAGCAAAGAGGTCGATGTCTGTGTCAAACTTG 22267870 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || || || ||||||| || ||| || | || || || Sbjct 22267869 TTGGCAAATAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCACCTGCTCCAAAAACA 22267813 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || |||||||||| || || || ||||| || ||||| | || || || | || ||| Sbjct 22267812 CACACGGAACGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACATCA 22267753 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| || || || ||||||||||| ||||||| Sbjct 22267752 CCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCGTAC 22267693 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | ||| | | || || || | || || | ||| | |||||||| || Sbjct 22267692 TTATGGCTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGA 22267633 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||| ||||| || | ||| ||||| |||| | |||| || || Sbjct 22267632 TACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATT---CTTTCA 22267576 Query 160407 CGC---AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || |||| || || || | || || || || |||||||| || || Sbjct 22267575 TTCTCTAGCACGTACTCCACATAATTCCTACTGACCACGAAATAGGCGCTGCCTGAAAAC 22267516 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | ||| | | ||| || |||||| || ||||| | || | ||| || Sbjct 22267515 AGAGGTGTTTCAAGAGGAGGTTGCATTTTGTCAGTCCCAGTGTTTGTCAGCTTTCCATTA 22267456 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | | |||| |||||||| | | || | | |||||| || || ||| Sbjct 22267455 ACAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCT 22267396 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 || |||| | || | || || || | | |||| || || || || || || | Sbjct 22267395 AGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGATTGGTTTTAATA 22267336 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 ||||| || |||| || | ||||||| ||||||||| | || |||| || ||| Sbjct 22267335 GGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGG 22267276 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||| || || | || ||||| || || ||||| || || || || || |||| Sbjct 22267275 TCCTGCATACAGTTGAGGTCGGCCTGGACTCGACTCCATGATGCATATACCACACTCTCC 22267216 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGA 160820 || | |||||||||||||||||||| |||||| || | || || |||| | |||| | Sbjct 22267215 AGCTGACTGGCCACAAAGACGTTATTGAAACAAGATGCAATGCCAATCACCGCAGCCAAA 22267156 Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 ||| | ||| || | ||| |||||| || | |||||| | ||||||||| |||| Sbjct 22267155 AAGGA-ATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAG 22267099 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| || | || || | ||| || || || ||||| | ||| || || || ||| Sbjct 22267098 ATGGCCCTCAGGAGTCTGTCAAGCATTTCGATTTTGTGATGAACCACTATGGAATATGCT 22267039 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || |||||||| | ||| || ||| |||| | | || || ||| ||||||| Sbjct 22267038 ATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCTTCTTGATG 22266979 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || |||||| |||||||| ||||| Sbjct 22266978 AAAGAAGTACAATCATTAGTCATGTTTATATA 22266947 >seq1718 Length=11014186 Score = 170 bits (188), Expect = 2e-37 Identities = 228/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || || || || || || || || |||||||||||| || Sbjct 5541230 AGGGTGAGGCAGGCTATTCCTGAGATTTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 5541171 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || || || || |||| ||| |||||||| || || | |||||| | |||| ||| Sbjct 5541170 TAACACCCCTCATCATCCAAGGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGAGTCCC 5541111 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | || || ||||| | ||| ||||| | || || || ||||| || ||||||| | Sbjct 5541110 AGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACACCATGGTTCTTG 5541051 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 |||||||| |||||||| || ||||| ||| || || |||||||| || || |||| Sbjct 5541050 CTGAAGGTAGCCATGTTTTCTGGGCTTACGGCTTTGATTTTCTGCCACGTCACAATCAAG 5540991 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | || | ||| || |||| | ||||| || ||||||||||| |||| Sbjct 5540990 ACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTCTCTT 5540931 Query 168453 TCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 5540930 TCATCTTGGGTCACCAC 5540914 Score = 107 bits (118), Expect = 2e-18 Identities = 147/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||||| |||| || || |||| |||||||||||| || || ||||||||||| Sbjct 5543841 GTCACAGTCCCCAGGTGCAGCACCTGGCATATCACCTCC---TTCCCCACTTGACTCTTG 5543785 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || || || || || | | || || ||| ||| || |||||| | ||| | | | Sbjct 5543784 GGGTCCTTGACCTGGAGGACACTGGTGACAGATGTGGTGCCATTGGGGTGTGAGAAAATC 5543725 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || ||||| || || ||||| || | ||||||||| | || ||||| || ||||| Sbjct 5543724 TCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGTCGG 5543665 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | |||||||| || ||||||| Sbjct 5543664 GCATTGGCAGAGCAAGTGATATTTA 5543640 >seq65597 Length=65395183 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 176234 ATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGG 176293 ||| ||| |||| |||| || |||| |||||| | ||||| ||||||| | || ||| Sbjct 4584634 ATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCTGCTGG 4584693 Query 176294 AATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAA 176353 ||| || |||||||| |||| || || || || | ||| | ||||| | | || | Sbjct 4584694 AATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAG 4584753 Query 176354 TAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAA 176413 || | ||||| |||||||| |||||| || |||| ||||||||||| || | | Sbjct 4584754 AAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAAGGAAAG 4584813 Query 176414 ATAGAACTTACA 176425 |||||| || || Sbjct 4584814 ATAGAATTTGCA 4584825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576745894686480