Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq65591 107 4e-18 >seq65591 Length=11041708 Score = 107 bits (118), Expect = 4e-18 Identities = 169/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 || ||||||| | ||| | || || | ||| | ||| | ||| ||| || || | ||| Sbjct 2177359 TAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGCTGTAA 2177417 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || | || |||| |||| ||| || ||||||||||| | ||| || |||| | Sbjct 2177418 TCAGACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGA 2177477 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || ||| || ||| | |||||| | | Sbjct 2177478 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGT 2177537 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTTA 192540 || || | ||||||||||| || || ||| ||||| | ||| |||||||| ||| Sbjct 2177538 TCAACCTTGAGAGTAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTTA 2177595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983652569787300