Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10551 118 1e-21 seq65591 111 1e-19 seq5812 100 3e-16 seq2541 95.1 1e-14 seq3210 89.7 5e-13 seq65597 87.8 2e-12 seq14121 84.2 2e-11 seq7793 82.4 7e-11 seq5350 82.4 7e-11 >seq10551 Length=27482606 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || ||||| || || || || ||||| || ||| || Sbjct 16152180 GATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTT 16152239 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| | || |||| ||| ||||| ||||| Sbjct 16152240 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCA 16152299 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| || || || ||||| ||| | | |||| || || || Sbjct 16152300 GCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAA 16152359 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGC 24917 |||||||||||| || || || || | ||||||| Sbjct 16152360 CATTCAAAAGGAGTCCACGCTTCATCTTGTGTTGC 16152394 >seq65591 Length=11041708 Score = 111 bits (122), Expect = 1e-19 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACC-GGTAAAACTATTACGCTCGAAGT 24753 |||| || ||||||||| ||| | ||||| || | || || || ||||| ||| | || Sbjct 2177600 ATTGCTAAGATGCAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGT 2177541 Query 24754 AGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACC 24813 ||| || | || ||| ||||| ||| |||||||| || || |||||||| || Sbjct 2177540 TGAACCCTCAGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCC 2177481 Query 24814 TCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAA-CATGT 24872 ||| |||| ||| | | |||||||| || || || ||||| ||| || | | | ||| Sbjct 2177480 TCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATG-GACATATCTTGT 2177422 Query 24873 CAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | ||||| | |||||||||||| || || || || | |||||| || Sbjct 2177421 CTGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 2177375 >seq5812 Length=6624047 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 3076524 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076583 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3076584 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076643 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| || | | | |||| || || || Sbjct 3076644 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAA 3076703 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || ||| |||| | || ||| | ||||| Sbjct 3076704 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGGGGAGG 3076751 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | |||||||| || || || || || || || || Sbjct 3075610 ACAATGCAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 3075669 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||||||||| || || || || || || Sbjct 3075670 AGCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 3075729 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||||| || |||||||| || | | | | | || || || Sbjct 3075730 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTAC 3075789 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 3075790 AACATCCAGAAAGAGTCCACCCTGCACCTGGT 3075821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 3075840 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3075899 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3075900 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3075959 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| || | | | | | || || || || Sbjct 3075960 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076019 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 3076020 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076049 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 3076068 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076127 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3076128 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076187 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| || | | | | | || || || || Sbjct 3076188 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076247 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 3076248 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 3076296 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 3076355 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3076356 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3076415 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| || | | | | | || || || || Sbjct 3076416 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 3076475 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 3076476 CATCCAGAAAGAGTCCACTCTGCACCTGGT 3076505 >seq2541 Length=1506631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || | | || || || || ||| || | Sbjct 494347 GATGCAGATTTTTGTGAAAACCCTTACGGGAAAGTCCTTCACTCTTGAGGTTGAACCCTC 494288 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| |||||| ||||| |||||||| || || ||||||| ||||| ||||| Sbjct 494287 GGTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGATCA 494228 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| | || || ||||| || | | | |||| || || | Sbjct 494227 GCAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTACAG 494168 Query 24883 CATTCAAAAGGAATCGACAC 24902 |||||||||||| || |||| Sbjct 494167 CATTCAAAAGGAGTCCACAC 494148 >seq3210 Length=13039658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC-ACC 24763 |||||||||| | || || | |||| || || || || || || || |||||| | | Sbjct 10166944 TGCAGATCTTCGTGAAGACCTTGACCGAGAAGACCATCACCCTGGAGGT-GAAGCCCAGC 10166886 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || ||| | | | || ||||||||| ||||| || || || || ||||| Sbjct 10166885 GACACCATTGAGCACGTTGAGGCCAA-GATCCAAGATAAAGAGGGCATCCCCCCTGATCA 10166827 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA-AACATGTCAGATTATA 24881 | | | ||||||||||| ||||||||||||| || | || | | | |||| || || | Sbjct 10166826 ATAGAGGCTGATCTTTGCCAGGAAACAGCTGGAAGA-TGGACACATCCTGTCCGACTACA 10166768 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || || || || || || || |||| Sbjct 10166767 ACATCCAGAAAGAGTCTACTCTGTACCTGGT 10166737 >seq65597 Length=65395183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || | || || || ||||| | | | || || ||| Sbjct 13732942 GATGCAGATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAG 13732883 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||| || |||| ||| | ||| |||| |||||| ||||| || || | || | Sbjct 13732882 TAACACCACTGATAACGTCAAAGCTAAA-ATCCGAGACAAGGAAGGCATCCCACATGACC 13732824 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || |||| ||||| || |||||||||||||| | | | ||||| || | Sbjct 13732823 AGCAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACA 13732764 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||| || || || || || ||||||||| Sbjct 13732763 ACATTCAGAAAGAGTCCACTCTGCACTTGGTG 13732732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||||| | ||| || ||||| || || || || ||||| || || ||| Sbjct 48054908 GATGCAAATCTTTATGATAACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGCCCAG 48054849 Query 24763 CGA---CACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 || ||| | |||| || ||| | ||| |||||||| | || || || | || || Sbjct 48054848 TGATGCCACTG-AGAAT-GGCAAAGCTAAA-ATCCAAGATGAGGAGGGCATCCTACCTGA 48054792 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || | ||| |||| ||||| || |||||||||||||| | | | || | || || || Sbjct 48054791 CCAGTAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGA-TGGCCACAC-TCTCCGACTA 48054734 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || || ||||||||| Sbjct 48054733 CAATATCCAGAAAGAGTCCAC-CTGCACTTGGTG 48054701 >seq14121 Length=32252759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| || || || |||| ||||| || || || || |||||||| | | Sbjct 18962255 GATGCAGATCTTCATAAAGACCTTAACTGGTAAGACCATCACCCTGGAAGTAGAGCCTAG 18962314 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || | | |||| |||| |||| | | || || || || | Sbjct 18962315 TAACACCATTGAGAATGTCGAGGCCACGATCTAAGATAAAGCATGCATTCCCCCTGACTA 18962374 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||| ||||||| ||| | ||| | | | |||| | | || Sbjct 18962375 GCAGAGGTTGATCTTTGCCAGGAAACACCTGAATGATGGGCACACCTTGTCTAACCA-AA 18962433 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || ||||| || |||| |||||| || | ||| | ||||| Sbjct 18962434 CATCCAGAAAGAATCCACTCTACTCTTGGTCCTGTGCTTGAGGGGAGG 18962481 >seq7793 Length=19070987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/245 (68%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAAC----CGGTAAAACTATTACGCTCGAAGTAGAAG 24758 ||||||||||||| | || | || || ||| || || || | ||||| || || Sbjct 18919638 GATGCAGATCTTTGTGAAGAGCCTGACATTGCGGCAAGACCATCGCACTCGAGGTCGAGC 18919697 Query 24759 CCACCGACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 ||| ||||| | | ||||| ||| | ||| ||||||||||| || || || || || Sbjct 18919698 CCAGTGACACCACTGAAAACGTCAAAGCTAAA-ATCCAAGACAAGGAGGGCATCCCACCT 18919756 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || ||| |||| ||||| || ||||||||||| || | | | ||||| Sbjct 18919757 GACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGACAGCTGCACTCTCTCAGAC 18919816 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACT 24937 || || ||| | || || || || ||||||||| | | ||| || ||| ||| Sbjct 18919817 TAAAA----CAACAAGAGTCCACTCTGCACTTGGTGCTTCTTCTGCAGGGCGGCATCACT 18919872 Query 24938 GAGCC 24942 ||||| Sbjct 18919873 GAGCC 18919877 >seq5350 Length=2239624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||| ||| | ||||| || | | || |||| || ||| | ||| || | Sbjct 1454293 ATGCAGACTTTTGTGAAAACTCTTAAGGAGAAGACTACCACTCTCAAGACTGAACCCTCG 1454352 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 | ||| ||||| |||| |||||||| || || |||||||| ||||| ||||| Sbjct 1454353 AATACAAAAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 1454412 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||| | || ||||||| || || || ||||| ||| || | || |||| || || || Sbjct 1454413 CAAAGGCTGCTCTTTGCTGGCAAGCAACTGGAAGATG-GATATACTCTGTCTGACTACAA 1454471 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || || | | |||||| || Sbjct 1454472 TATTCAAAAGGAGTCCACTCTTAATCTTGTGTTGAGA 1454508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449528695215440