Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4924 82.4 6e-11 >seq4924 Length=6499587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || | |||||||| ||||| ||| | ||| ||| || Sbjct 3091049 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 3090990 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || | | | || || ||||| || || |||||| | ||| || Sbjct 3090989 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGAC 3090930 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || || |||||||| |||| | | || | | |||||| Sbjct 3090929 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 3090870 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 |||||||| ||||| || || ||||| |||| || | || |||||| Sbjct 3090869 AACATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACGTCT--GAGGGG 3090823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412511543203814