Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10551 113 3e-20 seq13474 107 1e-18 seq65591 95.1 9e-15 seq2541 91.5 1e-13 seq5812 89.7 4e-13 seq14121 86.0 5e-12 seq7271 84.2 2e-11 >seq10551 Length=27482606 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29573 GCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAAT 29632 ||| ||| | |||||||||||| || ||||||||||| || || | | || || || Sbjct 16152394 GCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCAT 16152335 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| | ||| |||||||||||| || ||||| | || || | Sbjct 16152334 CTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTAT 16152275 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || | || || ||| |||||| || || | |||| || || ||||| || | Sbjct 16152274 TCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGG 16152215 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| || || |||||||| || Sbjct 16152214 TCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATCTT 16152178 >seq13474 Length=40992597 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||| ||| || || | | ||| || ||| || ||||| Sbjct 16257479 ATGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTG 16257420 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||||||||||||||| | ||||| || || || || || | || Sbjct 16257419 CTTGCCAGCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTT 16257360 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||||| || | ||| ||| || || ||| | ||||| || || | Sbjct 16257359 GGCCTTTACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAATGATAGTCTTCCCTAT 16257300 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| | || |||||||| || Sbjct 16257299 AAGGGTTTTCATGAAAATCTGCATCTT 16257273 >seq65591 Length=11041708 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||| | ||||| | | | | | ||| Sbjct 2177378 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCCATC 2177437 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | || | ||||||||||| || ||||| || || || || Sbjct 2177438 TTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATC 2177497 Query 29694 TTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || || | |||| | ||||| || || || |||| || | ||||| || Sbjct 2177498 CTG-GATCTTGGCCTTTG-TATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAATG 2177555 Query 29752 GTTTTGCCAGTTAA-GGTTTTAACAAATATCTGCATTTTA 29790 || || || ||| |||||| ||||| |||||||| ||| Sbjct 2177556 GTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTTA 2177595 >seq2541 Length=1506631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || ||||||||| | || || | | ||| || || || ||||| ||| || Sbjct 494150 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGTACGTCCGTCTTCCAGTTGCTTGTCA 494209 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | ||| |||||||||||| || ||| | || || || || || | || || Sbjct 494210 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGGATCTTGGCCTTT 494269 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| |||||| || | || |||| || |||||||| | | || || || | |||| Sbjct 494270 ACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGACTTTCCCGTAAGGGTT 494329 Query 29770 TTAACAAATATCTGCATTTT 29789 || ||||| |||||||| || Sbjct 494330 TTCACAAAAATCTGCATCTT 494349 >seq5812 Length=6624047 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || |||| || || ||||| ||||| || ||||| || || | Sbjct 3076751 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 3076692 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || || || ||| | |||| || ||||| || || || Sbjct 3076691 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076632 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| | || || Sbjct 3076631 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076572 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 3076571 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq14121 Length=32252759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | ||| ||||| | || ||||||||||| || ||||| | | | Sbjct 18962481 CCTCCCCTCAAGCACAGGACCAAGAGTAGAGTGGATTCTTTCTGGATGTT-TGGTTAGAC 18962423 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||||| || ||||| | ||| | ||||| || |||| || || ||| Sbjct 18962422 AAGGTGTGCCCATCATTCAGGTGTTTCCTGGCAAAGATCAACCTCTGCTAGTCAGGGGGA 18962363 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || | |||| |||| | | | |||| | || | |||| | | | |||||| Sbjct 18962362 ATGCATGCTTTATCTTAGATCGTGGCCTCGACATTCTCAATGGTGTTACTAGGCTCTACT 18962303 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||||||||| || | || |||||||| Sbjct 18962302 TCCAGGGTGATGGTCTTACCAGTTAAGGTCTTTATGAAGATCTGCAT 18962256 >seq7271 Length=14933599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||||||| | ||| |||||||||||| || |||||||| || || Sbjct 9022838 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCTTCCTT 9022897 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 | || | || || ||| || || ||||| ||||||| |||||||| || Sbjct 9022898 ACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGAGTGAT 9022957 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | | |||||| ||||| ||| |||| || Sbjct 9022958 GGTCTTCCCCATAAGGGTTTTCACAAAAATCCGCATATT 9022996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384911226639318