Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1040 199 3e-45 seq63014 116 3e-20 seq12044 114 1e-19 seq14553 104 2e-16 seq10175 95.1 9e-14 >seq1040 Length=2026387 Score = 199 bits (220), Expect = 3e-45 Identities = 793/1229 (65%), Gaps = 33/1229 (3%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| || || ||||| ||||| | ||||| |||||||||| |||| | || | Sbjct 1123075 GTCATGATTCCGCCAGCAGTTTCCATGCCAAGGAAAAGAGGAGTAACATTTAACAGCAGC 1123134 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||||| |||||| | | ||| || || ||||| || | ||| |||||| Sbjct 1123135 AAATCTTGAACATTTTCAGATTTGTCTCCAGATAGGATGGCTGCCTGGACAGCTGCACCA 1123194 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 | |||||||| |||||||| || | | | ||| | ||||| ||||| || || | Sbjct 1123195 AAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAACTTTTTTCCATTAAAGAAGTCC 1123254 Query 281843 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||||| ||| | |||||||||| | | || || || || | ||||| ||||| Sbjct 1123255 TGTAGAAGTT-TCTGAATCTTAGGAATATGGGTAGAACCACCCACCAGGACAATATCATG 1123313 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA---CC 281958 | ||| || || || || || | |||| | ||||| || || || || || || Sbjct 1123314 GATCTGGGACTTGTCAAGCTTCGCATCCTACGGGACTTTCTCTACAGGGTCCAGGGTGCC 1123373 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 | | ||| | ||| ||| |||||||| |||| || || | | | || | Sbjct 1123374 A--TGGAAA-AGGTCAGAATTCAGTTCTTCAAATTGGGCATGGGTGATAAAGGTATAGAA 1123430 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 |||||| |||| | | |||||| ||||| | | || || ||| | || | Sbjct 1123431 GTCAATTTCTTCATAGAGCAAATCAATCTCAATACTGGCCTGGGTGTTGGAAAAAAGGGT 1123490 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTTTTGCTGATTGATTCA 282137 || |||||||||||| | || || | | | | | || | ||| | | | | | Sbjct 1123491 ACACTTAGCACGTTCAGAAGCAGTACAGGAGCATTGAACAGCCCTTTTATTCTC-ACTGA 1123549 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 282195 || | |||| || | ||| || ||| ||| | | ||| | || | | || || Sbjct 1123550 CGTCCTTCTTATGCTTGCACTTAAACTCTGCAATAAA--ATGGTTGACCATTCAGTTGTC 1123607 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| ||||| || | || | ||| | || | |||| | | |||| ||||| ||||| Sbjct 1123608 AAAGTCTTCTCCATCTAAGTGAGTGTCCCCAGCTGTAGATTTCACTTTGAAAATCCCATC 1123667 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||||| | | || | |||||| || ||||| |||| ||||| || || ||||| Sbjct 1123668 TTCAACTGTGAGAATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAGATCAGCACATT 1123727 Query 282316 CATTTCTTTGTCTTGG----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 |||||| | ||||| || | ||||| |||| |||||||| |||||| | Sbjct 1123728 ----TCTTTGAGCTCCAACCTTTTTGTCTAAGCCATAAGCAATAGCAGCAGAAGTTGGCT 1123783 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| |||||||| ||||| ||||||||||| |||| ||||||||||| || || | Sbjct 1123784 CATTGATAATTCTAGGTACATTGAGACCAGCAATAATTCCAGCATCTTTAGTAGCCTGCC 1123843 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || || || || || || ||||| || || || | ||||| ||| | || |||| Sbjct 1123844 ACTGAGAGTCATTGAAGTAAGCAGGTACTGTCATGATGGCATTTGTAATGGTCTTCCCAA 1123903 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || || ||| | | ||||| || | |||| | | || || | | |||||| Sbjct 1123904 GGTAGGCTTCTGCAATATCCTTCATCTTTGTCAAAACCCTAGACGACACCTCCTCTGGAT 1123963 Query 282552 A-ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 | | | | ||| | ||| ||| ||||| | | || | | || ||| Sbjct 1123964 AGAAACTTTTTGTCTCTCCCTTG-TATTCTACTT-GACCTTGGGCCTGCCAGCATTATTC 1124021 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATT---GAACACTTTGGTCATTAAAATCT 282667 | || || |||| || ||| |||| || | |||| | ||| |||||| Sbjct 1124022 ACCACCAGGAAGGGCCGATGCTTCGTATCAGACTAGGCAACAGT---ATCA-CCAAATCT 1124077 Query 282668 CT-ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 | ||||| | ||||| | ||||||| ||| ||||| || || | ||| |||||| Sbjct 1124078 ATGTCCAATCAGGCGTTTGGTATCAAAAGCAGTGTTGGTGGGGTTCATTGCCACTTGATT 1124137 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 || || ||||| || |||| || || | || ||||| | ||||| ||| | || Sbjct 1124138 CTTTGCAGCATCACCTATCAATTGCTCCATATCAGTAAAGGCCACATAACTTGGCGCGGT 1124197 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || || | ||| || ||||| ||||| |||| | || || | ||||| ||||| Sbjct 1124198 TCGGTTTCCCTAATCGTTGGCAATTATTTCCACTTCTCTATGCTGGAAGACACCCACACA 1124257 Query 282847 ACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | | || || || | |||||| |||| Sbjct 1124258 AGAGTAGGTGGTGCCGAGATCAATGCCAA 1124286 >seq63014 Length=3126935 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| ||||||||||||||| ||||| |||||||| | ||| Sbjct 2456583 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTAAGTACA 2456642 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 2456643 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGCCGCTGAGAGTCATTGAAGTAA 2456702 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| ||| || Sbjct 2456703 GCAGGTACTGTGACCACAGCATTTGTAAC 2456731 Score = 102 bits (112), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||| |||||||| || | | | | ||| | | ||| |||||||| Sbjct 2455931 GCACCATAAGCGACAGCCTCATCAGGGTTGATACTCTTATTCAACTCTTTTCCATTGAAG 2455990 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||||||| ||| | |||||| ||||| | || || || || | ||||| Sbjct 2455991 AAGTCCTGTAGAAGTT-TCTGAATCTTAGGGATACGGGTAGAACCACCCACCAGAACAAT 2456049 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || || | || || || || || || | |||| | ||||||| || || || || Sbjct 2456050 ATCGTGGATTTGGGACTTGTCGAGCTTCGCATCCCGAAGGGCTTTTTCTACAGGGTCCAG 2456109 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | || | ||| | | | |||||| ||| || | || | || | || Sbjct 2456110 GGTGCCACGGAAAAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTGATAGAGGTATA 2456169 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 2456170 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTACTGGAAGAAAG 2456229 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTG--CTGATT 282131 | ||| ||||||||||| || || || | || | || | || ||||| || | | Sbjct 2456230 GGTACGCTTAGCACGTTCGCAAGCAGTGCGGAGACGACGGACAGCCCTTTTGTTCTCACT 2456289 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 282189 ||| || | |||| || | ||| || ||| ||| | | ||| | || | || Sbjct 2456290 GATG----TCCTTCTTATGCTTGCGCTTAAACTCTGCAATAAA--ATGGTTGACCATTCG 2456343 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| ||||| || || || | || | ||| | |||| | | |||| ||||| Sbjct 2456344 GTTGTCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTCACTTCGAAAAT 2456403 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| | | || | |||||| || ||||| |||| ||||| || || Sbjct 2456404 TCCATCTTCAATTGTGAGAATCGACACATCAAAAGTGCCACCTCCCAAGTCAAAGATCAG 2456463 Query 282310 TACATTCATTTC 282321 ||||| |||| Sbjct 2456464 CACATTTCTTTC 2456475 >seq12044 Length=10514555 Score = 114 bits (126), Expect = 1e-19 Identities = 216/312 (69%), Gaps = 18/312 (6%) Strand=Plus/Plus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCT 281317 |||| |||||||||||||| ||| ||||| || ||| || ||| |||||| | ||| Sbjct 1861035 ATAACTTTCTAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTATCTTCCTCT 1861092 Query 281318 TCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCC 281373 |||| | || ||| || ||| ||| || ||||| | || |||| || || Sbjct 1861093 GCAAACTTTTCAGCATCATTAACCATCCTTTCAATCTCTTCGGGTGTCAGGCGATTTT-- 1861150 Query 281374 GCGATTATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGT 281430 | | ||| ||||| || || || || |||||| ||| ||| || | || || Sbjct 1861151 --GGTCATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGT 1861205 Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| |||||| ||||| |||| | ||||| ||||||||||| || ||||| || | Sbjct 1861206 CACTCGAAGAATGCCATTCACATCTATCTCAAAAGTGACTTCAATCTGTGGGACTCCACG 1861265 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| ||||| || || || ||| ||||||||| || ||| ||||| || | Sbjct 1861266 GGGAGCAGGAGGGATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAG 1861325 Query 281551 TTTTCGTTCACC 281562 ||||||||| Sbjct 1861326 GGGTCGTTCACC 1861337 >seq14553 Length=23333051 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| |||||||| ||||||||||| || ||| | || |||||| | Sbjct 1935257 TGTACACTTATCCTGACCGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 1935316 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| |||||| ||||| |||||||| |||||||||||| | | |||||| | Sbjct 1935317 GTGGTTGGGAGAGATAGATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 1935376 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 1935377 GAAGCTTCTCATAAA 1935391 >seq10175 Length=28871421 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 9551443 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCAGACATTCGCAAAGTCAT 9551384 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 9551383 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCG 9551324 Query 131296 TGATGGA 131302 |||||| Sbjct 9551323 CGATGGA 9551317 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 9554668 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCAGACATTCGCAAAGTCAT 9554609 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 9554608 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCG 9554549 Query 131296 TGATGGA 131302 |||||| Sbjct 9554548 CGATGGA 9554542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737409815417148