Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq5818 91.5 1e-13 >seq5818 Length=23789964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || || ||| | || |||| ||| |||| |||| || Sbjct 5062843 TCCAGCATATGGGGACCAACGTGTGACGGCCTCGACCGCATCGTTGAGCGCTGTGGCTTG 5062784 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || || ||||||||| | | |||||||||||||| ||||||| | ||| Sbjct 5062783 CCTGAGATGCACGTTGGCGACTGGATGCTCTTTGAAAACATGGGTGCTTACACCGTGGCT 5062724 Query 21242 AGCTCTTCAACCTTTAACGGCTTCC 21266 | |||| ||||| ||||| |||| Sbjct 5062723 GCCGCTTCTACCTTCAACGGGTTCC 5062699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463165504196640