Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq5812 84.2 2e-11 >seq5812 Length=6624047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||||||| |||| ||||||||||| ||||||||||||||| | | || Sbjct 4778834 CACAAAATCCAAAACAGATTATGAGAAAAATTCAAAATAATTTATTAAATAGGTACCGAG 4778775 Query 231 GGCTTCTTTAAGAAGCATTAACAA 254 |||| || ||| ||||||||||| Sbjct 4778774 GGCTCCTCCAAGGAGCATTAACAA 4778751 Score = 82.4 bits (90), Expect = 7e-11 Identities = 189/280 (68%), Gaps = 26/280 (9%) Strand=Plus/Minus Query 1468 GGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGC 1527 |||| | ||||||||||| || | || || | ||| |||| |||| ||||| ||| Sbjct 4776539 GGACGCAGCGATACCTGAGTGGCAGACCATGGTGCGAGGGAGCAGGGCC--CGCTTCGGC 4776482 Query 1528 AACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTA 1587 | |||| || ||| ||||||| |||| || | |||| ||||||||||||| Sbjct 4776481 AGCAGCGTCTGGAGCCAGATGTGTTCGCCATGGTACC-GGGAG--GTATATAAAGGGCCC 4776425 Query 1588 GTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT------------ 1635 || |||| || || | || |||||||| | || |||||||| Sbjct 4776424 TCTGCGAGGAAGAACA----ACGTCCCGCCCACAGCAAGATCATTACTCAGCTTTTTTTC 4776369 Query 1636 CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA- 1693 ||||||||| ||||||| || ||||| | | || | |||||| | || ||||||| Sbjct 4776368 CAGAAAACACTTTCAAAATTCTGCCACCCGGGGCTGTGTGAAAGCAGGTCTGGAAGGAAG 4776309 Query 1694 --ATGAAGTTACCCTTAAGATGGGCAGATG-CTTGACGCA 1730 ||| || ||| | || |||||||||| |||||| || Sbjct 4776308 TGCTGAGGTCACCTTCAAAGTGGGCAGATGCCTTGACTCA 4776269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438200391764000