Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4924 168 1e-36 seq10551 136 8e-27 seq65591 122 2e-22 seq2541 118 2e-21 seq5350 111 3e-19 seq13474 109 1e-18 seq65597 102 2e-16 seq14121 102 2e-16 seq7793 100 6e-16 seq3652 89.7 1e-12 seq2899 86.0 1e-11 seq847 84.2 4e-11 >seq4924 Length=6499587 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 3090820 CCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 3090879 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || ||||| || Sbjct 3090880 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3090939 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || ||| | ||||| ||| Sbjct 3090940 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 3090999 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| ||||| || || || |||||| Sbjct 3091000 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 3091047 >seq10551 Length=27482606 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| ||| | | || ||||| ||||| Sbjct 16152383 TGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGC 16152324 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| | |||||||| ||||| ||||| ||| ||||||||| || ||||| Sbjct 16152323 TTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGGATCTTG 16152264 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || || | ||| || ||||| || || Sbjct 16152263 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGGTCTTCCCGGTA 16152204 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 16152203 AGGGTTTTCACGAAAATCTGCAT 16152181 >seq65591 Length=11041708 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || | |||||||| | || || ||||| ||||| Sbjct 2177388 TGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGATATGTCCATCTTCCAGTTGC 2177447 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| |||| ||||| |||||||||||||| || ||||| Sbjct 2177448 TTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2177507 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT-GT 82786 || ||| || ||| || ||||| ||||| || | | ||| || ||||| ||| | Sbjct 2177508 GCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGTAATGGTCTTCCCTCAT 2177567 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||| Sbjct 2177568 AAGGGTTTTCACAAAAATCTGCAT 2177591 >seq2541 Length=1506631 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| ||||| || |||||||| | |||||||| ||||| ||||| |||||||| Sbjct 494189 CCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTCC 494248 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || ||| | ||||| || || | ||| Sbjct 494249 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTG 494308 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | ||| || || | || || ||||| |||||||| Sbjct 494309 AAGGACTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 494346 >seq5350 Length=2239624 Score = 111 bits (122), Expect = 3e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || || || ||||| || ||||| ||| | || ||||| ||||| || Sbjct 1454492 AGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTATATCCATCTTCCAGTTGCTTG 1454433 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||||| || ||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 1454432 CCAGCAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 1454373 Query 82731 TTTACATTTTCAATCGTAT 82749 |||| |||||| | |||| Sbjct 1454372 TTTATATTTTCTTTTGTAT 1454354 >seq13474 Length=40992597 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || | || || ||||| | | | || ||||| ||||| Sbjct 16257478 TGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGC 16257419 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| | | |||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 16257418 TTGCCAGCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTG 16257359 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | ||| | || ||| || || | | | || ||||| ||| | Sbjct 16257358 GCCTTTACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAATGATAGTCTTCCCTATA 16257299 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || | || |||||||| Sbjct 16257298 AGGGTTTTCATGAAAATCTGCAT 16257276 >seq65597 Length=65395183 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 || ||| || || ||||||||||| || |||||||| || || || || || ||| | | Sbjct 13732723 CAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCG 13732782 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 | ||| || || ||||| || ||||| || || | || || || | || || ||||| Sbjct 13732783 ATTGTCCTCCAGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTC 13732842 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| ||| | || || ||||| || || ||| | || | | | || || || | || Sbjct 13732843 CTTGTCTCGGATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGT 13732902 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||| ||||| || || |||||||| Sbjct 13732903 AATGGTCTTGCCCATCAGTGTCTTCACGAAGATCTGCAT 13732941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| || || || || || ||||||||||| || || ||| Sbjct 16165085 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 16165144 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || || |||||||| | ||| |||||||| ||| Sbjct 16165145 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTGTATCATCACTGTACAATGTTTACATTA 16165204 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 16165205 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 16165241 Score = 93.3 bits (102), Expect = 8e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649 |||| ||| || || |||||||| || || |||||||| ||||| || || || | | | Sbjct 11098473 CTCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTG 11098414 Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 | | ||| || || ||||| | ||||| || || | || || | || | || || Sbjct 11098413 CAGCTGTCCTCCAGCTGTTTGCGGGCAAAAATCAGACACTGCTGGCCAGGTGAGATGTCT 11098354 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||| | || || ||||| | || ||| | || ||| | | || || | Sbjct 11098353 TCCTTGTCTCGGATTTTAGCTTTGATGTTGTCAGTGGTGTCACTGAACTTGACCTCAAGT 11098294 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||||||||||| ||||| || || |||||||| Sbjct 11098293 GTGATGGTCTTGCCTGTCAGAGTCTTCACGAAGATCTGCAT 11098253 >seq14121 Length=32252759 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| | ||| || ||| | ||||| ||||||||||| || || | | ||| Sbjct 18962482 ACCTCCCCTCAAGCACAGGACCAAGAGTAGAGTGGATTCTTTCTGGATGTT-TGGTTAGA 18962424 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | || || | || ||||| | |||||||| | || || | || || || Sbjct 18962423 CAAGGTGTGCCCATCATTCAGGTGTTTCCTGGCAAAGATCAACCTCTGCTAGTCAGGGGG 18962364 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || | | | ||||||| ||| | || | ||||| ||||| || | | |||| ||||| Sbjct 18962363 AATGCATGCTTTATCTTAGATCGTGGCCTCGACATTCTCAATGGTGTTACTAGGCTCTAC 18962304 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||||| || |||||||| Sbjct 18962303 TTCCAGGGTGATGGTCTTACCAGTTAAGGTCTTTATGAAGATCTGCAT 18962256 >seq7793 Length=19070987 Score = 100 bits (110), Expect = 6e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||||||||| || ||| ||| | || || || || ||| | | | |||| Sbjct 18919850 AGCACCAAGTGCAGAGTGGACTCT---TGT-TGTTTTAGTCTGAGAGAGTGCAGCTGTCT 18919795 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| || ||||| || || | || || || || || || || ||||| ||| Sbjct 18919794 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 18919735 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| || |||||| | || ||| | || || || || | | || ||| Sbjct 18919734 TGGATTTTAGCTTTGACGTTTTCAGTGGTGTCACTGGGCTCGACCTCGAGTGCGATGGTC 18919675 Query 82779 TTGCC----TGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||| ||||| |||||||| Sbjct 18919674 TTGCCGCAATGTCAGGCTCTTCACAAAGATCTGCAT 18919639 >seq3652 Length=12486750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || |||| ||| | || ||||||| |||||| | || || ||||| | || || Sbjct 11161688 AGCACCAAGTACAGGATGGACTCTTTCTAGATATTACAGTCTGAGAGAATGCATCCATCC 11161629 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 | || ||||| || ||||| || || || | || || | | || || || || ||| Sbjct 11161628 TTCAGCTGTTTGCCCGCAAAAATCAGGCTCTTCTGGTCAGATGAAATGCCCTCTTTGTCT 11161569 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| ||||||||| || ||| | || || || || | | ||| ||| Sbjct 11161568 TGGATTTTAGCTTTGACATTTTCA---GTGTCACTGGGATCGACCTCGAGTGCTATGGTC 11161512 Query 82779 TTGCCTGTCAACGTCTTTACAAA 82801 ||||||||||| || | ||||| Sbjct 11161511 TTGCCTGTCAAGGTGTCCACAAA 11161489 >seq2899 Length=5183325 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG-ATCTGGAGGTATTCCTTC 82711 || ||||| ||||| || ||| ||||||| | |||||| || ||| | || | | ||| Sbjct 580434 CCATCTTCCAGTTGCTTGCCATCAAAGATCAATCTTTGCTGCATCAGAAGAAACCCATTC 580493 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 |||||| | |||||| || ||||||||||| || ||||| ||||| ||||| | || Sbjct 580494 CTTATCCTAAATCTTGGCCTTTACATTTTCTATTGTATCCAACGGTTCAACTTCAAGAGC 580553 Query 82772 TATCGTCTT 82780 || ||||| Sbjct 580554 GATGGTCTT 580562 >seq847 Length=4940370 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| || |||||||| || ||| | || || || || Sbjct 1644815 CCCTCCTTGTCTTGGATTTTAGCTTTGACGTTTTCAATGGTGTCACTGGGCTCGACCTCA 1644756 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 1644755 AGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1644712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981001999397722