Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5812 145 7e-30 seq4924 136 4e-27 seq65597 105 6e-18 seq7793 93.3 4e-14 seq3210 89.7 5e-13 seq4361 82.4 7e-11 >seq5812 Length=6624047 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| ||| | ||| | ||| || |||||||| || Sbjct 3075810 GGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCC 3075751 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 3075750 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 3075691 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| |||||||||| || | ||||| ||| || ||||||| ||| Sbjct 3075690 GACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAAGT 3075631 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3075630 CTTCACGAAGATCTGCAT 3075613 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| ||| || ||| ||| || |||||||| || Sbjct 3076722 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTTCC 3076663 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 3076662 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 3076603 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 3076602 GACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGT 3076543 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3076542 CTTCACGAAGATCTGCAT 3076525 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| | ||| || |||||||| || Sbjct 3076037 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3075978 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| |||||||| |||||| |||| Sbjct 3075977 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3075918 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 3075917 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3075858 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3075857 TTCACGAAGATCTGCAT 3075841 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| | ||| || |||||||| || Sbjct 3076265 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076206 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| |||||||| |||||| |||| Sbjct 3076205 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076146 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 3076145 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076086 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3076085 TTCACGAAGATCTGCAT 3076069 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| | ||| || |||||||| || Sbjct 3076493 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCG 3076434 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| |||||||| |||||| |||| Sbjct 3076433 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3076374 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 3076373 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 3076314 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3076313 TTCACGAAGATCTGCAT 3076297 >seq4924 Length=6499587 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 3090849 GGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 3090907 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 3090908 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 3090967 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||| ||||| || | ||||| ||| ||||||||||| | Sbjct 3090968 TCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 3091027 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 3091028 TCTTCACGAAGATTTGCAT 3091046 >seq65597 Length=65395183 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| |||||||| || | ||| | |||||| ||| Sbjct 11098458 AAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGCAGCTGTCCTCCAGC 11098399 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || |||| || |||| || | ||||||| | || | |||| |||||||||| ||| Sbjct 11098398 TGTTTGCGGGCAAAAATCAGACACTGCTGGCCAGGTGAGATGTCTTCCTTGTCTCGGAT- 11098340 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | ||| ||||| || || || || | |||| ||| ||||| Sbjct 11098339 TTTAGCTTTGATGTTGTCAGTGGTGTCACTGAACTTGACCTCAAGTGTGATGGTCTTGCC 11098280 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || ||||| |||||||| Sbjct 11098279 TGTCAGAGTCTTCACGAAGATCTGCAT 11098253 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||||||||| || ||||| || | ||| ||| |||||| ||||| |||| Sbjct 13732745 GTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTG--CGATTGTCCTCCAGCTGTTTGC 13732802 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 |||| |||| || | ||||||||| | ||||||||||||||||| ||| ||| || Sbjct 13732803 CCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCGGAT-TTTAGCT 13732861 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| |||| ||||||| || | | || | ||| ||||| |||| Sbjct 13732862 TTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCTTGCCCATCAGT 13732921 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 13732922 GTCTTCACGAAGATCTGCAT 13732941 Score = 105 bits (116), Expect = 6e-18 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| ||| | |||| | ||||| ||||| ||||| Sbjct 48054712 GGTGGACTCTTTCTGGATATTGTAGTCGGAGAGTGTGGCCA--TCCTCCAGCTGTTTGCC 48054769 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||| |||||| || ||||||| |||| || ||| ||| |||| Sbjct 48054770 CGCAAAAATCAGACGCTACTGGTCAGGTAGGATGCCCTCCTCATCTTGGAT-TTTAGCTT 48054828 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | |||| | || ||||||| || |||| |||| ||| ||||||||||| | Sbjct 48054829 TGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTCAGGG 48054888 Query 133642 TTTTTACGAAAATCTGCAT 133660 || | | || || ||||| Sbjct 48054889 TTATCATAAAGATTTGCAT 48054907 >seq7793 Length=19070987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| |||||||| |||| || ||||||||||| || |||||||| ||||| Sbjct 18919798 GTCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 18919739 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| || |||| | ||| ||||| ||||||| || |||| | || Sbjct 18919738 GTCTTGGAT-TTTAGCTTTGACGTTTTCAGTGGTGTCACTGGGCTCGACCTCGAGTGCGA 18919680 Query 133624 CGGTTTTGCCG----GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||| ||||| | || || || |||||||| Sbjct 18919679 TGGTCTTGCCGCAATGTCAGGCTCTTCACAAAGATCTGCAT 18919639 >seq3210 Length=13039658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCC----TCGAGCTGCTT 133519 || ||||||||||| || ||||| ||| || ||| | |||| || ||||| || Sbjct 10166749 GTAGACTCTTTCTGGATGTTGTAGTCGGACA----GGATGTGTCCATCTTCCAGCTGTTT 10166804 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 | || | || |||| || || || || |||||||| || || || |||||| Sbjct 10166805 CCTGGCAAAGATCAGCCTCTATTGATCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGC 10166864 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | ||||||| |||||| |||||| ||| || | ||||| ||| || |||||| Sbjct 10166865 CTCAACGTGCTCAATGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTCTTCTCGGTCAA 10166924 Query 133640 AGTTTTTACGAAAATCTGCA 133659 || || ||||| ||||||| Sbjct 10166925 GGTCTTCACGAAGATCTGCA 10166944 >seq4361 Length=21435851 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||| || || ||| | | | | ||| || Sbjct 2916419 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCA-TTCTCCAG 2916477 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| || | || | || |||||| || |||||||| |||||||| || Sbjct 2916478 CTGTTTGCCCGCAAAACTCAGACCCTCCTGGTCAGGTGGGATGCCCTCCTTGTC-TTGGG 2916536 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | ||||| |||||| || ||| |||| ||| |||| Sbjct 2916537 TTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTCTTGC 2916596 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || || ||||| Sbjct 2916597 CCATCAGGGTCTTCACAAAGATTTGCAT 2916624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483024407029520