Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12054 262 5e-65 seq1718 194 2e-44 seq65597 125 8e-24 seq13092 109 6e-19 >seq12054 Length=25135041 Score = 262 bits (290), Expect = 5e-65 Identities = 620/932 (67%), Gaps = 17/932 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || ||||||| || | ||| || | ||| |||| || || | ||| || Sbjct 22267940 CCAAGGCTTTATGTCTCAGGTGCTCATCCAAACATTGGATAGCAAAGAGGTCGATGTCTG 22267881 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || || | ||| ||| || | || ||||| || | || || | Sbjct 22267880 TGTCAAACTTGTTGGCAAATAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCACCTG 22267824 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || |||||||| || || || || || |||| || || || |||| || | Sbjct 22267823 CTCCAAAAACACACACGGAACGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCT 22267764 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || |||||||||| Sbjct 22267763 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 22267704 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | |||| | || || || | || | ||||| | || Sbjct 22267703 ACATGTCGTACTTATGGCTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAG 22267644 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 22267643 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 22267584 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | ||| || || ||| | || | || || ||||| | Sbjct 22267583 TTCTTTCATTCTCTAGCACGTACTCCACATAATTCCTACTGACCACGAAATAGGCGCTGC 22267524 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| || |||||| || ||||| | | Sbjct 22267523 CTGAAAACAGAGGTGTTTCAAGAGGAGGTTGCATTTTGTCAGTCCCAGTGTTTGTCAGCT 22267464 Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 |||| | || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 22267463 TTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 22267408 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || ||||| |||| ||| || | ||| || | | || || || ||| Sbjct 22267407 TTCTCAGTTTCTAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGA 22267348 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | || || ||||| || | || ||||| | | || Sbjct 22267347 TTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTC 22267288 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || ||||| | |||||| || ||||||||||| |||||||| || || || Sbjct 22267287 ATTCTGTAGAGGTCCTGCATACAGTTGAGGTCGGCCTGGACTCGACTCCATGATGCATAT 22267228 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| |||||||| || | |||||| || | || || ||| Sbjct 22267227 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTATTGAAACAAGATGCAATGCCAATC 22267168 Query 162835 ACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | ||| | || ||| || | ||| | || || || | ||| || | |||| Sbjct 22267167 ACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTC 22267111 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| ||||||||||||||| | ||| || | ||| || || || || || ||||| Sbjct 22267110 TGAGGCATGTAGATGGCCCTCAGGAGTCTGTCAAGCATTTCGATTTTGTGATGAACCACT 22267051 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| ||||| || ||||| ||||| || Sbjct 22267050 ATGGAATATGCTATTGGAAACTCTGCCTCTTC 22267019 >seq1718 Length=11014186 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || ||||| ||||| ||||||||||| || | | Sbjct 5541235 CAAAGAGGGTGAGGCAGGCTATTCCTGAGATTTTCCCGGAACCAAAAGTATTGAAGAGGC 5541176 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || || |||| ||| || ||||| || || | || || | || Sbjct 5541175 ACTTGTAACACCCCTCATCATCCAAGGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGA 5541116 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| | | ||||| || | || |||||| |||||||| || | Sbjct 5541115 GTCCCAGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACACCATGGT 5541056 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| || ||||||||||| ||||| || || || ||||||||||| || | Sbjct 5541055 TCTTGCTGAAGGTAGCCATGTTTTCTGGGCTTACGGCTTTGATTTTCTGCCACGTCACAA 5540996 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||| ||| |||||||||||||||| | | Sbjct 5540995 TCAAGACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCT 5540936 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || ||||| Sbjct 5540935 CTCTTTCATCTTGGGTCACCAC 5540914 Score = 134 bits (148), Expect = 2e-26 Identities = 186/256 (73%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| | || |||||||||| ||| | || | |||||||||||||| Sbjct 5543859 ACAGTTTGCCTGAAGCTGGTCACAGTCCCCAGGTGCAGCACCTGGCATATCACCTCCT-- 5543802 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||||||||| || || || || || || || | || || |||||||| || || Sbjct 5543801 -TCCCCACTTGACTCTTGGGGTCCTTGACCTGGAGGACACTGGTGACAGATGTGGTGCCA 5543743 Query 171623 TTACGATGT-AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | ||| |||| | | |||||| || || ||||| || || | || ||||| | Sbjct 5543742 TTGGGGTGTGAGAAAA-TCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGA 5543684 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||||| ||| | ||||||||||| || |||| ||||| ||||| Sbjct 5543683 GATCACAGGGGCTGGTCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAA 5543624 Query 171742 CTCATAGTGTAATGAC 171757 | ||||| ||| ||| Sbjct 5543623 TTTATAGT-TAAGGAC 5543609 >seq65597 Length=65395183 Score = 125 bits (138), Expect = 8e-24 Identities = 373/562 (66%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| ||||| || | ||| | || | |||||||| || || || || ||| Sbjct 4584662 TAATCTTCCACATGAATAAATGAATCTGCTGGAATATAATTTTCATAGTTTTCCCTAGAT 4584721 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | || || || | ||||| | || |||| || || |||||| ||||| || || Sbjct 4584722 GGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCATTGTAGAGCTTTTCTGTGATG 4584781 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCG 177144 || || |||| | ||||| || || | ||||||||||| || | ||||| ||| | Sbjct 4584782 TAATCTTTGTGGATTGAGTTTTCGAAGGAAAGATAGAATTTGCAAGTAGATATGGTA--G 4584839 Query 177145 GGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTA 177204 | || || || | ||| | ||| ||||| | | | ||| || ||| || || | Sbjct 4584840 GAATTAAATCTTTATCATTCACATATTCTCCAAACGCTTGCCCATAAGTATGGATTTCAA 4584899 Query 177205 TGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTG 177263 || ||| || | ||| ||| || || || || | || || |||||| || || Sbjct 4584900 TGCTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCATGCTCAGGGTTCCAGTTACTA 4584958 Query 177264 ACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGATTC-GATACTAATGCAGTGT 177321 || |||||||| || ||| | |||||||| || || ||| | || |||| || | Sbjct 4584959 ACAACCCAGCACACCAACCT-CTCTTTGCTTGGCAC----TTCAAACACGAATG-GGTTT 4585012 Query 177322 CT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAAC 177380 | || | ||| | | ||||| ||||| || ||||| ||||| || | || || | Sbjct 4585013 GTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGAGTCCCGGCGATAAGTCAGA 4585072 Query 177381 GTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTA 177438 || || ||||| |||| || |||| || |||| ||| ||| | | |||||||| | Sbjct 4585073 GTCAGGTTGAACAGGTGCTCAATACCACTCTTTTG--GGGCGTGTGAGTTGGCGATTCCA 4585130 Query 177439 AGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGAT 177498 | |||||||| ||||| || || || | ||| || | | | ||||| | || ||| Sbjct 4585131 AATTCATCCAAATCCATTTCTGGAACGGTGGCCTAGCCTGCTGAGGTAAATTAGTCAGAT 4585190 Query 177499 CTATACTTATCTCTCTGTGGTG 177520 | ||| || |||| ||| || Sbjct 4585191 CCCAACTGATGTCTCGGTGATG 4585212 >seq13092 Length=35143243 Score = 109 bits (120), Expect = 6e-19 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||||| |||||||| || |||||| ||| | | |||||| Sbjct 14626423 ACCATCTCAGCATTGGTCTTAATAGGAAAGTCTGTTCCGCAGGTATTCAGGAAGTATTTC 14626482 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || || | | |||||| ||||| ||||| || | Sbjct 14626483 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTAAGATCAGCCTGCACCCTGG 14626540 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| | ||| || | Sbjct 14626541 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTTGGAAGCATG 14626600 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| ||||| || Sbjct 14626601 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCCGGA--GACTTCTCATCCACGTGGAC 14626658 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 || |||| ||||||||||| || | ||||||||| | || || || | || || || Sbjct 14626659 ACAATATATGTTCTGAGGGGCATACAAGGCCCTCAGCAGCCTTTCAAAGTTTTCAATTTT 14626718 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || || ||||| || Sbjct 14626719 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 14626754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577957700220800