Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13474 109 1e-18 seq65591 96.9 8e-15 seq10551 91.5 3e-13 seq5350 89.7 1e-12 seq4924 89.7 1e-12 seq5812 86.0 1e-11 >seq13474 Length=40992597 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || | ||| || || |||| | | || || ||| ||| | ||||| ||| Sbjct 16257291 AAAACCCTTATAGGGAAGACTATCATTCTCGAGGTTGAAGCTTCAGTTACAGTAGAAAAT 16257350 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| | || |||||| | | ||| Sbjct 16257351 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGATCAGCAAAGATTGACCTTT 16257410 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || ||| | || |||||||| || || ||||| Sbjct 16257411 GCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAACGTTCAAAAGGAGTCC 16257470 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||| |||||||||| Sbjct 16257471 ACTCTTCATGTTGCGTTGAGACTTC 16257495 >seq65591 Length=11041708 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCAC-AGGAAAAACGATCACTTTGGAAGT 206219 ||||| ||| ||||| ||| ||||| || | ||| || || || ||| | | || Sbjct 2177597 GCTAAGATG---CAGATTTTTGTGAAAACCCTTATGAGGGAAGACCATTACTCTCAAGGT 2177541 Query 206220 GGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTT 206279 ||| || || ||| | ||| |||| ||||| || || || ||||||||| Sbjct 2177540 TGAACCCTCAGATACAATAGAAGATACAAAGGCCAAGATCCAGGATAAGGAAGGAATTCC 2177481 Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || | |||||||||||||| || || ||||| ||||||||||| | ||| | Sbjct 2177480 TCCTCATCAGCAAAGACTTATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCTTGTC 2177421 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||||||| | | || || ||||| |||||||| ||||| ||||||||| Sbjct 2177420 TGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTT 2177372 >seq10551 Length=27482606 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| | || ||| | ||| Sbjct 16152196 AAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTTGGATACAATAGAAAAT 16152255 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | || |||| |||| || || |||||||| | ||| Sbjct 16152256 GTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCAGCAAAGACTGACCTTT 16152315 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| || | || |||||| | || || ||||| Sbjct 16152316 GCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAGTCC 16152375 Query 206365 ACTCTTCACCTTGTTTTG 206382 || ||||| ||||| ||| Sbjct 16152376 ACGCTTCATCTTGTGTTG 16152393 >seq5350 Length=2239624 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| | |||||| ||||| || || | ||| ||||||| || ||| Sbjct 1454512 GAAGTCTCAACACAAGATTAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGAGTAT 1454453 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || |||| |||| ||| ||| Sbjct 1454452 ATCCATCTTCCAGTTGCTTGCCAGCAAAGAGCAGCCTTTGCTGA 1454409 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 ||||| ||||| || || || ||||||||| || || ||||| || |||| | Sbjct 1454369 TAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGCTCTTTG 1454428 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| ||| || | || ||||| | || || ||||| | Sbjct 1454429 CTGGCAAGCAACTGGAAGATGGATATACTCTGTCTGACTACAATATTCAAAAGGAGTCCA 1454488 Query 206366 CTCTTCACCTTGTTTTGAGACTTC 206389 ||||| | ||||| |||||||||| Sbjct 1454489 CTCTTAATCTTGTGTTGAGACTTC 1454512 >seq4924 Length=6499587 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||||||||| |||||| | || Sbjct 3091031 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGTGACACCATTGAGAAT 3090972 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 3090971 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 3090912 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| | ||||||||||| Sbjct 3090911 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCG 3090852 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 3090851 ACCCTGCACCTGGT 3090838 >seq5812 Length=6624047 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || || ||| || || || ||||| ||||||||| Sbjct 3076609 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAG 3076668 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||| ||| | || || |||| |||||| ||||||||||||| || || ||| Sbjct 3076669 CAGCTGGAAGACGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCAC 3076728 Query 206374 CTTGT 206378 || || Sbjct 3076729 CTGGT 3076733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180827509901758