Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1718 279 6e-70 seq13090 150 2e-31 seq14102 134 2e-26 seq8729 131 2e-25 seq7796 122 1e-22 seq10551 114 2e-20 seq7792 104 3e-17 >seq1718 Length=11014186 Score = 279 bits (308), Expect = 6e-70 Identities = 253/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || | |||||||||||| || || ||| | |||||| ||| Sbjct 5540914 GTGGTGACCCAAGATGAAAGAGAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 5540973 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | ||||| || || || ||||||| || |||||||||||||| || | ||||| Sbjct 5540974 GAAACTTCCCATGAAGTCTTGATTGTGACGTGGCAGAAAATCAAAGCCGTAAGCCCAGAA 5541033 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| || || ||||| |||| || || ||||||||| | || |||||||| ||| Sbjct 5541034 AACATGGCTACCTTCAGCAAGAACCATGGTGTTGTGGTCCAGACTGCCTATAAGGATAAG 5541093 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||||| | ||||||||| || || |||||||| ||||| Sbjct 5541094 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACCTTG 5541153 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||||||| ||||| |||||||| || || ||||| || ||||||||||| || Sbjct 5541154 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAAATCTCAGGA 5541213 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | |||||||||||||||| Sbjct 5541214 ATAGCCTGCCTCACCCTCT 5541232 Score = 212 bits (234), Expect = 7e-50 Identities = 213/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || | || | |||||||| ||||| |||||||| || ||||| || Sbjct 5543594 GTACAGCCCACAGTAGTCCTTAACTATAAATTCTTTGAAGACCACCTAAATATCACTTGC 5543653 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 |||||||||||||| || | ||| ||| | |||||| | || ||||||| ||| || Sbjct 5543654 TCTGCCAATGCCCGACCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 5543713 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| || | || || | ||||| || || ||||| |||||||| ||||| Sbjct 5543714 AACAGTACTGAGATTTTCTCACACCCCAATGGCACCACATCTGTCACCAGTGTCCTCCAG 5543773 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || || |||||||||||||| |||| |||||||| || ||||| ||| ||||||||| Sbjct 5543774 GTCAAGGACCCCAAGAGTCAAGTGGGGAAGGAGGTGATATGCCAGGTGCTGCACCTGGGG 5543833 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || | ||| ||| ||||||| | ||| |||| Sbjct 5543834 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 5543870 >seq13090 Length=34591212 Score = 150 bits (166), Expect = 2e-31 Identities = 133/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||| ||||||||||| | ||||||||| |||||||| Sbjct 25833568 CTTCAGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 25833509 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || ||||||||||| | |||||||||||||||||||| || ||||| || | Sbjct 25833508 GGGCACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 25833449 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||| || |||||||| ||| | ||||| || || || |||||| Sbjct 25833448 CACCACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATG 25833403 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||||||||||||||| ||||| || ||||| |||| || || |||||| Sbjct 25830261 GCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCCAAATCCCCTTCTTTTCTGCAG 25830202 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 | ||| ||| | || || || || ||||||| | ||| |||||||| | ||||||| Sbjct 25830201 GTGAATCCCAGGCCATTTAGGAAGTCACGGGACCCATTGGCATCCCAGATTCTCACTCCC 25830142 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 || | || || || |||| | ||| | ||| ||| || Sbjct 25830141 TTAGACGACAGTTCTTTAGCATTTGTGCATCCCTGGAAGA 25830102 >seq14102 Length=4978252 Score = 134 bits (148), Expect = 2e-26 Identities = 128/166 (77%), Gaps = 12/166 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| || |||||| |||||||||||| Sbjct 325765 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTTTACCTGGAGGAGGTGA 325824 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| |||| || ||||| ||||| ||| | || || |||| Sbjct 325825 TGCCCCAGGCTGAGAGCCA------------GGGCCCAGACATCAAGAAACACGTGAACT 325872 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATG 178396 | || ||||||||||| ||||| || || ||||||| ||||| || Sbjct 325873 CCCTTGGGGAAAAGCTGAAGACACTCAGGCTGAGGCTTCGGCGCTG 325918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 327969 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 328028 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| || |||| Sbjct 328029 TAGAAGCCTACATGACAATGAAGATGA 328055 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||||||||||||||||| ||| | || |||||| ||||||| ||||||||| Sbjct 325434 CAAATGAAGGACCAGCTGGACAACATATTGCTGAACGGGTCCTTGCTGGAGGACTTTAAG 325493 Query 178233 G 178233 | Sbjct 325494 G 325494 >seq8729 Length=5610107 Score = 131 bits (144), Expect = 2e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | | || || | ||||| |||||| | || |||||||| Sbjct 4303523 GTACTCCCTGGTATTTGTCATCGGCCTGGTGGGCAACATTCTGGTGGTTCTGGTCCTCAT 4303464 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| |||| || |||||||| ||||| ||| ||||||||||| | || Sbjct 4303463 GCAGTACAAGAGACTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCCGA 4303404 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| ||||| || | || || | ||| | Sbjct 4303403 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCGAC-TACAGTCTGAAGGA-----GAG 4303350 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| || || |||||| |||||| | |||||||| | |||||| |||| Sbjct 4303349 CTGGGCATTCGGTAACGGCATGTGCAAGTTTCTCTCGGGCCTTTACTACGTGGGCTTGTA 4303290 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | ||| |||| || || | || |||| Sbjct 4303289 CAGCGAGATCTTTTTCATCATCCTGCTGACGATAGACCGGTACCTGGCGATCGTCCACGC 4303230 Query 8910 GGTG 8913 ||| Sbjct 4303229 CGTG 4303226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 4387575 TACTCGCTGGTGTTCATCTTTGGTTTCGTGGGCAACTTGCTGGTCGTCCTCATCCTGATA 4387634 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||||||||||||||| | ||| Sbjct 4387635 AACTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGTTCAACCTGGCCATCTCCGAC 4387694 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCA 8765 ||||| | || | || |||| | |||||||| Sbjct 4387695 CTGCTTTTCCTTCTGACTTTCCCAGTGTGGATTCA 4387729 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 4399141 TACTCGCTGGTGTTCATCTTTGGTTTCGTGGGCAACTTGCTGGTCGTCCTCATCCTGATA 4399200 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||| ||||||||||| | ||| Sbjct 4399201 AACTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGCTCAACCTGGCCATCTCCGAC 4399260 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | |||||| |||| || ||| Sbjct 4399261 CTGCTTTTCCTCTTCACCATCCCGTTCTGG 4399290 >seq7796 Length=1511589 Score = 122 bits (134), Expect = 1e-22 Identities = 201/284 (71%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 146867 TCAAA--ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGG 146923 ||||| || | |||||| ||||| || | || ||| | | | |||| |||||||| Sbjct 1339365 TCAAAGGATTTGGAGCTTTGGGAAAGGCCTTGG-TTCTCGACAAAGCTGCATTTTCAGCA 1339423 Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 | || ||| || || | | ||| || | || | | | | |||||| || |||| Sbjct 1339424 GTTCAGTGTGATTCAGAAAAATGTGTGCCTATGTCAAAGAGAGTAAAAAGTCACCTGGCT 1339483 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 | |||| | | | ||| || | |||||||| ||||| || || |||| | |||||||| Sbjct 1339484 TCAGGCTG-TGATGTGTGCAATCATGTAGG--AGCAGGGACTATTTGGCAACGTTGAAGG 1339540 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || ||||||||||| | ||||||| |||||||||||| || ||||| | || Sbjct 1339541 GCACACCTAGGCCCATGTCTGCTGACCTCTTGTACAGCTGGCAGGACAGCTCACTGTTCA 1339600 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||| || | |||||| ||| | || ||| | || || |||||| Sbjct 1339601 CCACATAGAGCTGGCAAAGGGTATGACACAGAGGTAGGGCCATG 1339644 >seq10551 Length=27482606 Score = 114 bits (126), Expect = 2e-20 Identities = 158/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 146875 TTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGG 146934 |||||||| ||||| || | | || | ||||| |||||||| |||| | ||| Sbjct 11321964 TTGAGCTTTGGGAAAGGCCTTGTTTTTCACTGAAGCTGCATTTTCAGCAGCTCAATGTGA 11321905 Query 146935 TTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTC 146994 || ||||| | ||| || || |||| |||| ||||| || || ||| | ||| | | Sbjct 11321904 TTCAGGTAAATGTGGGCATCTCCCAAAGTGTATACAAAATCACCTGGCCTCAGGTCCATA 11321845 Query 146995 ACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGG 147054 | || | | ||||||||||| || |||||| |||| ||||||||| | || | || | Sbjct 11321844 ATTTGTGTGATCATGTAGGTGAACAAGGAGTAGTTGGCAATGTTGAAGAGCACACACACG 11321785 Query 147055 CCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT 147094 ||| |||| | |||||||||||| |||||| || |||| Sbjct 11321784 TCCACGTCCACTAACCTCTGGTACA-CTGGCAAGACAGCT 11321746 >seq7792 Length=927264 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 146910 CTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCAC 146969 ||| |||||||| || || || || || || | ||| || || || | || || || Sbjct 794837 CTGCATTTTCAGTGGTTCAGTGTCATTCAGATAAATGTGTGCATCTCCTAAAGTATGTAC 794896 Query 146970 AAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCT 147029 |||||| || ||||| |||| | | ||| | | |||||||| | |||| |||||||| Sbjct 794897 AAAGTCACCTGGCTTCCGGCCCATGATGTGTGTGATCATGTAGGAGGGCAGGGAGTAGCT 794956 Query 147030 GGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACA 147079 ||| ||||||||||| | |||||||||| ||| | | |||||||| || Sbjct 794957 GGCGATGTTGAAGGGTGCTCCCAGGCCCAGGTCTGCTGGCCTCTGGTTCA 795006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 ||| |||| ||||||||||| ||||| | | | | || | ||| || |||||| Sbjct 795185 GCCTCAAAATGCCTCCACTGAAAGCCATTAATTAGGCCTAAGTCCCCTTCTTTTCTGCAG 795244 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | || || ||| |||| | | ||| ||||||| | |||| | Sbjct 795245 GAGAATCCCAGGCCTTCCAGGAAGTCGTAGGACTCATTGGCATCCCAGAATCTCACTTCT 795304 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAA 147462 |||| || || || |||| | ||| | || ||| ||||| |||| |||||||||| Sbjct 795305 TTGGACGACAGTTCTTTAGCATTTGTGTATTCCTCGATAAACCACAGCAACTCCTCCAAA 795364 Query 147463 ACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAG 147515 || ||| |||| || || | || | |||||||| || || | || ||||| Sbjct 795365 ACACCCTTCCAGAATACACGTTTAGGTGTCAGCAGAGGAAATTCATCTCTCAG 795417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583009554427200