Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5812 123 3e-23 seq10551 100 3e-16 seq65597 96.9 3e-15 seq4924 96.9 3e-15 seq65591 86.0 6e-12 >seq5812 Length=6624047 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 3075839 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3075780 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3075779 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3075720 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | |||||| | ||||| Sbjct 3075719 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3075660 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| |||||||| ||||| || ||||| || |||||| Sbjct 3075659 TCCAGGGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 3076067 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076008 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3076007 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3075948 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 3075947 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3075888 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 3075887 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 3076295 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076236 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3076235 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076176 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 3076175 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076116 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 3076115 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 3076523 CCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAG 3076464 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3076463 AGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076404 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 3076403 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076344 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 3076343 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || | || ||||| || ||||| || || || |||||||||||| Sbjct 3076751 CCTCCCCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 3076692 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3076691 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3076632 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 3076631 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 3076572 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 3076571 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq10551 Length=27482606 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134500 GCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGT 134559 ||||||| || || |||||||| |||||||||||||||||||| | || | | Sbjct 16152394 GCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCAT 16152335 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || || || ||||| ||||| ||| | |||||||| || || || |||| || | Sbjct 16152334 CTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTAT 16152275 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGG 134679 || || || || || || | ||| || | | ||| || |||||||| |||| Sbjct 16152274 TCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGG 16152215 Query 134680 TTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || ||||| | ||||| |||||||| ||||| ||| Sbjct 16152214 TCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATCTTG 16152177 >seq65597 Length=65395183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| || || |||||||||||||| | ||| || Sbjct 13732724 AGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGA 13732783 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||||||||| |||||||||| || |||||| || | || |||||||| Sbjct 13732784 TTGTCCTCCAGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCC 13732843 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || ||| | ||||| |||||| Sbjct 13732844 TTGTCTCGGATTTTAGCTTTGAC 13732866 >seq4924 Length=6499587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || || || ||||||||||| || | Sbjct 3090820 CCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 3090879 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 3090880 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3090939 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | |||||| Sbjct 3090940 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 3090999 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 3091000 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 3091050 >seq65591 Length=11041708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||| |||| || | ||| | | || Sbjct 2177373 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAA-GATATG 2177431 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| || | | ||||||| || || || ||||| Sbjct 2177432 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2177491 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || | || | ||| || || | ||| || | |||||| Sbjct 2177492 CTTATCCTGGATCTTGGCCTTTGTATCTTCTATTGTATCTGAGGGTTCAACCTTGAGAGT 2177551 Query 134675 AATGGTTTTACCGGTTAA-AGTTTTAACGAAAATTTGCATTTT 134716 |||||| || || ||| ||||| || ||||| ||||| || Sbjct 2177552 AATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCATCTT 2177594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504983985946960