Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2426 136 5e-27 seq5818 129 8e-25 seq10551 86.0 9e-12 >seq2426 Length=324192 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 155634 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 155693 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| ||||| ||||||||||| ||||| |||||||| || | | ||||||| Sbjct 155694 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 155753 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 155754 TTTCTTATACCAT 155766 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 171213 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 171272 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||||| ||||||| || Sbjct 171273 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 171332 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 171333 TCCAGGTAAATAGC 171346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | || ||||| || || || ||||| | |||||||| || | Sbjct 175111 TAGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGT 175170 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| ||||||||||| | ||| ||||| | ||||| || | | || | ||||| Sbjct 175171 TGTACGTTTCAATAGCAGCTTCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCA 175230 Query 70109 ACATATGCTGAGGTCGTTC 70127 ||||||| || |||| ||| Sbjct 175231 ACATATGTTGTGGTCTTTC 175249 >seq5818 Length=23789964 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 4866334 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 4866275 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 4866274 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 4866215 Query 39759 CAACAA 39764 | |||| Sbjct 4866214 CGACAA 4866209 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 4865337 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4865278 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || ||||| ||||| | ||||| || || || || ||| Sbjct 4865277 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 4865232 >seq10551 Length=27482606 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || || | Sbjct 20328024 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 20327968 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | || ||||||| | || ||| |||| Sbjct 20327967 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 20327908 Query 40107 ATA 40109 ||| Sbjct 20327907 ATA 20327905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686345551956720