Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5818 98.7 8e-16 seq10551 89.7 4e-13 >seq5818 Length=23789964 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| ||||||||||| | ||||||| || ||||| || || || ||||||||| Sbjct 4865221 CGGTTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTACGGCTTCCAAATTGCC 4865280 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| |||||||| ||||| || || || || || || |||||| Sbjct 4865281 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTATATTAAAGAT 4865337 >seq10551 Length=27482606 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || || |||||||||||||||||||| || ||||| |||||||| || ||||| | Sbjct 20340140 AAAATCCCTTCGATTTTATGGAAAATATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 20340199 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 20340200 AACGAGTTTCAGAGTATCAGCG 20340221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397138243615990