Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq12054 93.3 6e-14 >seq12054 Length=25135041 Score = 93.3 bits (102), Expect = 6e-14 Identities = 232/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| ||||| ||| | Sbjct 22267019 GAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAAATCGAAATGCTT 22267078 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| ||| | || |||||| Sbjct 22267079 GACAGACTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATTCATGTGGACAAA 22267138 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || || | || | || | | || | | | ||| || || ||| ||||| Sbjct 22267139 AAATCAGAGGATTCCTTTTTGGCTGCGGTGATT--GGCATTGCATCTTGTTTCAATAACG 22267196 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| | |||| | ||||| || | || |||||||| || ||||||| Sbjct 22267197 TCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTATATGCATCATGGAGTCGAGTCCAGGCCG 22267256 Query 13921 ACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTGGAGGTACCTGCTCA 13977 |||||| ||| ||| |||||| || | | || || | |||| |||| || | | Sbjct 22267257 ACCTCAACTGTATGCAGGACCTCTACAGAAT---GAGTGCAGACTGGAAGTACTTGATAA 22267313 Query 13978 ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 | || || || ||||| || || | || ||||| ||||| || || Sbjct 22267314 ATCTTTGTGGTATGGATTTTCCTATTAAAACCAATCTGGAAATTGT 22267359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658199050324480