Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4924 114 1e-20 seq65597 95.1 1e-14 >seq4924 Length=6499587 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || ||||||||||| Sbjct 3091046 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 3090987 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || || || |||||||| || || || || Sbjct 3090986 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 3090927 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 3090926 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3090867 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||||||| | || |||| | ||| || |||| ||| Sbjct 3090866 ATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACGTCTGAGGGGCGGC 3090819 >seq65597 Length=65395183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | ||||| | | || || || Sbjct 13732941 ATGCAGATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 13732882 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | ||| | |||||| ||||| | |||||| |||||||| |||| || || Sbjct 13732881 AACACCACTGATAACGTCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCAG 13732822 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| || | || | || |||||||| |||| |||| | || | || || |||||| Sbjct 13732821 CAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAAC 13732762 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | || ||||| | ||| || ||||||| Sbjct 13732761 ATTCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTG-GGGGTGG 13732716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434561777784960