Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1718 206 2e-48 seq7793 113 4e-20 seq13090 104 2e-17 >seq1718 Length=11014186 Score = 206 bits (228), Expect = 2e-48 Identities = 203/262 (77%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328 ||||| | || ||||| | ||||| || ||||| ||| | ||||| |||||||||| Sbjct 5540974 GAAACTTCCCATGAAGTCTTGATTGTGACGTGGCAGAAAATCAAAGCCGTAAGCCCAGAA 5541033 Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388 |||||||| || || || || |||| || ||||| || ||| | || || || ||||| Sbjct 5541034 AACATGGCTACCTTCAGCAAGAACCATGGTGTTGTGGTCCAGACTGCCTATAAGGATAAG 5541093 Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448 || ||||| |||||||| ||||| || | | |||| || ||||||||||| || || ||| Sbjct 5541094 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACCTTG 5541153 Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 |||||||| ||||| |||||||| | || || |||||||| || ||||| || |||||| Sbjct 5541154 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAAATCTCAGGA 5541213 Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530 |||| || || ||||| |||| Sbjct 5541214 ATAGCCTGCCTCACCCTCTTTG 5541235 >seq7793 Length=19070987 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 9769107 GTGGTGGAGGAGCTTTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 9769048 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 9769047 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 9768988 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 9768987 ATCGCCCTGTGGATGACCGA 9768968 >seq13090 Length=34591212 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || ||||| || || | || ||||||||| | || || || Sbjct 25833564 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25833505 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || |||||||||||||| |||||||||| ||||| || ||||| || || | Sbjct 25833504 ACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 25833445 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 ||||| ||||| | | | | || |||||||| || ||||| Sbjct 25833444 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATG 25833403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414145435901272