Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4361 93.3 4e-14 seq65597 91.5 1e-13 seq4924 86.0 5e-12 seq65594 82.4 7e-11 >seq4361 Length=21435851 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||| || || ||| |||||| || |||||||| || | | || || | Sbjct 2916410 CGTAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCA 2916469 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 | || ||||||||||||||||| | |||| || |||||| |||||| | || ||| || Sbjct 2916470 TTCTCCAGCTGTTTGCCCGCAAAACTCAGACCCTCCTGGTCAGGTGGG-ATGCCCTCCTT 2916528 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| | |||| ||||| | | | || || || | || || || ||||| Sbjct 2916529 GTCTTGGGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGAT 2916588 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||| |||| || || |||||||||||||||| Sbjct 2916589 GGTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATCT 2916626 >seq65597 Length=65395183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || ||||| || |||| ||||| | | || || Sbjct 48054701 CACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTCGGAGAGTGT--GGCCATCCTC 48054757 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| || ||||||| |||||| ||| || | || ||| | || Sbjct 48054758 CAGCTGTTTGCCCGCAAAAATCAGACGCTACTGGTCAGGTAGG-ATGCCCTCCTCATCTT 48054816 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| || | | ||| || | ||| || || | ||||| | | Sbjct 48054817 GGATTTTAGCTTTGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCT 48054876 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| ||| | | |||||||||||||| Sbjct 48054877 TGCCGGTCAGGGTTATCATAAAGATTTGCATCT 48054909 >seq4924 Length=6499587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | |||| |||| || || || |||||| || || || ||||| | Sbjct 3090818 AGCCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAG 3090877 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || || | || || ||||| ||||| ||||| || || | ||||||||| | || Sbjct 3090878 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGG 3090937 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || || || ||| ||| || || | || | | || || || | |||| Sbjct 3090938 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCA 3090997 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | |||| ||||| | || || ||||| || || || ||||||||||| || || Sbjct 3090998 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGAC 3091052 >seq65594 Length=21052295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || ||||||| ||| ||||| || |||||||||||||| |||| | | |||||| ||||| Sbjct 7854590 TCCAGCTGTTCGCCTGCAAAAATTAGACGCTGCTGGTCAGGTGTG-ATGCTCTCCTTGTC 7854532 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCA-CCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 |||||| ||||| ||| || ||||| || | ||| || || | ||||| Sbjct 7854531 TTGGATTTTAGCTTTGA-CGTTTTCAGTGGTATCACTGGGCTCGACCTCGAGTGTGATGG 7854473 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | || |||||||| | || ||||| ||||||| Sbjct 7854472 TCTTGCCCGTCAGAATCTTGACAAACATTTGCA 7854440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429202188762974