Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10551 100 2e-16 seq4924 98.7 7e-16 seq2541 93.3 3e-14 seq13474 86.0 4e-12 seq5812 86.0 4e-12 >seq10551 Length=27482606 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||||||||| ||||| || Sbjct 16152178 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCC 16152237 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || | || |||| | || || ||| Sbjct 16152238 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGAT 16152297 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | ||||| ||||| ||||||||||| | ||| ||| | || ||| Sbjct 16152298 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 16152357 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 16152358 AACATTCAAAAGGAGTCCAC 16152377 >seq4924 Length=6499587 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || ||||| || || Sbjct 3091049 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 3090990 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | || || ||||| | || ||||| Sbjct 3090989 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCAGA 3090931 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 3090930 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 3090871 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 3090870 CAACATTCAGAAAGAGTCGAC 3090850 >seq2541 Length=1506631 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| |||||||| | ||||||| || ||||| || Sbjct 494349 AAGATGCAGATTTTTGTGAAAACCCTTACGGGAAAGTCCTTCACTCTTGAGGTTGAACCC 494290 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| || || ||| Sbjct 494289 TCGGTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGAT 494230 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | ||||| | ||| ||||||||||||| ||| || || || ||| Sbjct 494229 CAGCAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTAC 494170 Query 23788 AACATACAAAAAGAGTCCACA 23808 | ||| ||||| ||||||||| Sbjct 494169 AGCATTCAAAAGGAGTCCACA 494149 >seq13474 Length=40992597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| | || || || |||| |||||| ||||| | Sbjct 16257273 AAGATGCAGATTTTCATGAAAACCCTTATAGGGAAGACTATCATTCTCGAGGTTGAAGCT 16257332 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | | || || |||| |||| || || || || ||||| | || | ||| Sbjct 16257333 TCAGTTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGAT 16257392 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || | ||||| ||||| ||||||||||| | ||| || || || ||| Sbjct 16257393 CAGCAAAGATTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTAC 16257452 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||| | ||||| |||||||| Sbjct 16257453 AACGTTCAAAAGGAGTCCAC 16257472 >seq5812 Length=6624047 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 3076525 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3076584 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 3076585 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3076644 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || || |||||||||| |||||| | ||| |||||| Sbjct 3076645 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 3076704 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 3076705 ATCCAGAAAGAGTCCAC 3076721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337739369563784