Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5812 136 9e-27 seq13090 96.9 8e-15 seq7271 96.9 8e-15 seq2193 96.9 8e-15 seq3210 84.2 5e-11 >seq5812 Length=6624047 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| |||| ||||| |||| | || | ||| ||| Sbjct 3075824 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 3075765 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||||||| Sbjct 3075764 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 3075705 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 3075704 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3075645 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| || | ||| | |||||| Sbjct 3075644 TTACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| |||| | || | ||| ||| Sbjct 3076052 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 3075993 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 3075992 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3075933 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 3075932 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3075873 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3075872 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| |||| | || | ||| ||| Sbjct 3076280 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 3076221 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 3076220 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3076161 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 3076160 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3076101 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3076100 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| |||| | || | ||| ||| Sbjct 3076508 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 3076449 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 3076448 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3076389 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 3076388 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3076329 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3076328 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| |||| ||||| |||| || || | || ||| Sbjct 3076736 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3076677 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 3076676 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3076617 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 3076616 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3076557 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3076556 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq13090 Length=34591212 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || |||||||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 6299529 AATACCTGTCCATCAGTGATAGAAATGACGTTTGTCGGAATGTAAGCAGACACATCACCA 6299470 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| || || | || |||||||||||| Sbjct 6299469 GCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 6299422 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 6299097 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 6299156 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||||||||| |||||||| ||||| ||| ||||| Sbjct 6299157 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACA 6299196 >seq7271 Length=14933599 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| | ||| | ||||| || |||||||| | |||| | | |||||| Sbjct 9022777 CGAAGTCTCAACATAAGA-GAAGAGTAGACTCTTTTTGAA---TGTAGCCAGACAAAGTA 9022832 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||| || ||||| ||||| ||| | |||| ||| || || || ||||||||| Sbjct 9022833 TGTTCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCT 9022892 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| | |||||||| ||| ||| | | | ||||| || ||| || || | Sbjct 9022893 TCCTTACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGA 9022952 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||| | | ||||| Sbjct 9022953 GTGATGGTCTTCCCCATAAGGGTTTT 9022978 >seq2193 Length=10573696 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 || ||||| |||| |||||| | || || | | ||||||||| |||||||| || | Sbjct 4126981 GACTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACA 4126922 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||| | | ||||||| ||| ||||| | ||||||||||||||| ||| ||| Sbjct 4126921 AAGATCGGCCTCTGTTGGTTGGG-GGAATGTTCTTCTTGTCTTGGATCTTGGCCTTGACA 4126863 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 |||||||||| || ||||| || | ||||| ||||| || ||||| || || Sbjct 4126862 TTCTCGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 4126803 Query 225700 ATGAACACTTGCA 225712 | ||| | |||| Sbjct 4126802 ACGAAGATCTGCA 4126790 >seq3210 Length=13039658 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||| ||||| || ||||| |||| ||||| |||| || | |||||| Sbjct 10166734 AGGACCAGGTACAGAGTAGACTCTTTCTGGATGTTGTAGTCGGACAGGATGTGTCCATCT 10166793 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| |||| || ||||| || | | ||| || || || || || || || ||| Sbjct 10166794 TCCAGCTGTTTCCTGGCAAAGATCAGCCTCTATTGATCAGGGGGGATGCCCTCTTTATCT 10166853 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || |||||||| || | ||| || | ||||| ||| Sbjct 10166854 TGGATCTTGGCCTCAACGTGCTCAATGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTC 10166913 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 || | ||||| || || | ||| | |||| Sbjct 10166914 TTCTCGGTCAAGGTCTTCACGAAGATCTGCA 10166944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191528908085012