Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq13090 149 5e-31 seq7792 87.8 1e-12 seq7281 82.4 6e-11 >seq13090 Length=34591212 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || ||||| || ||||| || | ||||||||||||||| |||||| Sbjct 25833564 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25833505 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||||||||||| |||||||| || ||||| || | | Sbjct 25833504 ACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 25833445 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | || |||||| ||||| |||||||||||| Sbjct 25833444 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATGAGA 25833400 >seq7792 Length=927264 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||||| || || || | || | ||| || |||| ||||| || | || || Sbjct 794812 GGAAAGGC-CTTGGTTCTCGCTGAAACTGCATTTTCAGTGGTTCAGTGTCATTCAGATAA 794870 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGC 29730 | ||| |||||||| | || || ||||| || || || ||| |||| ||| ||| | Sbjct 794871 ATGTGTGCATCTCCTAAAGTATGTACAAAGTCACCTGGCTTCCGGCCCA-TGATGTGTGT 794929 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||| | | | || ||||||||||||||||| ||||| | || || |||| ||| Sbjct 794930 GATCATGTAGGAGGGCAGGGAGTAGCTGGCGATGTTGAAGGGTGCTCCCAGGCCCAGGTC 794989 Query 29791 CCCTGACCTCTGGT 29804 ||| |||||||| Sbjct 794990 TGCTGGCCTCTGGT 795003 >seq7281 Length=49932807 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 ||||| || || ||||| |||| || | ||||| | | ||||| |||||| | ||| Sbjct 13780830 TTAAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTTGGGA 13780889 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||| |||||| Sbjct 13780890 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCCTTTTACCT 13780937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405838482421828