Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6745 102 7e-17 seq5818 98.7 8e-16 seq10551 89.7 4e-13 >seq6745 Length=10762683 Score = 102 bits (112), Expect = 7e-17 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||||| ||||| | || | ||||| || ||||| | | || ||||||| Sbjct 6498997 CTCGTGAAAACCGACATTCAGCTAGCTCTTCCTTCTGGATGCTATGAAAGAGTAGCTCC- 6498939 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | |||||| ||||| | |||||||| || || || || || ||||| |||||| ||| Sbjct 6498938 ACATCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGAT 6498879 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945 |||| |||||| || |||| | ||||||||||| |||||| | | ||| | Sbjct 6498878 TATAAAGGAAATACTGATGTTGTACTCTTTAATTTTGGCAAAGAAAAGT-TTGAAGT-CA 6498821 Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||| || | | || || || ||||| ||| Sbjct 6498820 AAAAAGGGTGACCGAATTGCCCAGCTCATTTGTGAA 6498785 >seq5818 Length=23789964 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||| ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 4865336 TCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 4865277 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || ||||| || || | |||||||| | |||||||| Sbjct 4865276 ATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 4865233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | || | || || Sbjct 4866332 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 4866273 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 4866272 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 4866213 Query 4692 AC 4693 || Sbjct 4866212 AC 4866211 >seq10551 Length=27482606 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 20328024 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 20327968 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 20327967 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 20327908 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 20327907 ATAAGTCAAC 20327898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| |||||||||||| Sbjct 20340218 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATATTTTCC 20340159 Query 4320 ATAAAATCAAACGGATTAGTTGCGT 4344 |||||||| || ||||| ||||| Sbjct 20340158 ATAAAATCGAAGGGATTTTCTGCGT 20340134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426708184254134