Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq13090 125 5e-24 seq7792 96.9 3e-15 >seq13090 Length=34591212 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || ||||| || ||||| || | ||||||||||||||| ||||| Sbjct 25833564 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25833505 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| | ||||||||||| ||||| || || ||||| |||| Sbjct 25833504 ACACCAAGGCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 25833445 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| ||||| || |||||||| Sbjct 25833444 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATGAG 25833401 >seq7792 Length=927264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 400/625 (64%), Gaps = 36/625 (6%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||||| || || || | || | ||| | ||||| ||||| || || ||| || Sbjct 794812 GGAAAGGC-CTTGGTTCTCGCTGAAACTGCATTTTCAGTGGTTCAGTGTCATTCAGATAA 794870 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGC 27224 | ||| || ||||| | || || ||||| || || || ||| |||| ||| ||| | Sbjct 794871 ATGTGTGCATCTCCTAAAGTATGTACAAAGTCACCTGGCTTCCGGCCCA-TGATGTGTGT 794929 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| | | | || ||||||||||||||||| |||||| | || || |||| ||| Sbjct 794930 GATCATGTAGGAGGGCAGGGAGTAGCTGGCGATGTTGAAGGGTGCTCCCAGGCCCAGGTC 794989 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 | | |||||||| |||| |||| ||||| || | Sbjct 794990 TGCTGGCCTCTGGT-------TCACG------------------CGTAGAACTGGCAAAG 795024 Query 27345 GGCGTGGCACGGAGGAAGAGCCATG--AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402 ||| |||||| | || || || ||| | |||| | ||| | |||| || | Sbjct 795025 GGCATGGCACCAAACTAGGGCTGTGAAAGGATGA--CCTTTCCGATTCTAAGCGCGCAGG 795082 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462 ||||| | ||||| || ||||| | || | ||| | | |||||||| || || Sbjct 795083 ATGATTCTTCTGTCATCACGGTTGGTTTCGAACATGTCAATCACCTTTTGCAGTTGGTCT 795142 Query 27463 ACCCCCATCCCCGAGTAGTCT-ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521 || || || || || || | || || || |||| ||||| | ||||||||||| Sbjct 795143 ACTCCTTGACCTGAATAACCTGAATCT-ATATCTTTGTATTCTGCCTCAAAATGCCTCCA 795201 Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581 || || || | | | || | ||| || |||| ||| ||| ||| || Sbjct 795202 CTGAAAGCCATTAATTAGGCCTAAGTCCCCTTCTTTTCTGCAGGAGAATCCCAGGCCTTC 795261 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 || ||||| ||| | ||||| ||||||| | || | || || || ||||| Sbjct 795262 CAGGAAGTCGTAGGACTCATTGGCATCCCAGAATCTCACTTCTTTGGACGACAGTTCTTT 795321 Query 27642 GGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 | |||||| | |||| || |||||||||| |||||||| || ||||||| || | Sbjct 795322 AGCATTTGTGTATTCCTC-GATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAATA 795380 Query 27701 CCCTCTTGGTCGTGAGGAGGGGAAA 27725 | | || | || || || ||||| Sbjct 795381 CACGTTTAGGTGTCAGCAGAGGAAA 795405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369211788000338