Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2426 141 1e-28 seq5818 116 5e-21 seq10551 84.2 3e-11 >seq2426 Length=324192 Score = 141 bits (156), Expect = 1e-28 Identities = 111/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 155634 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 155693 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||| | ||| ||||||||||||||||| |||||||| || | | ||||||| Sbjct 155694 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 155753 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 155754 TTTCTTATACCAT 155766 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| ||||| || ||||| | |||||||| || || Sbjct 175112 AGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTT 175171 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| ||||||||| | ||||| ||||| || ||||| || |||| || | |||||| Sbjct 175172 GTACGTTTCAATAGCAGCTTCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCAA 175231 Query 77113 CATATGCTGAGGTCGTTC 77130 |||||| || |||| ||| Sbjct 175232 CATATGTTGTGGTCTTTC 175249 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || || || ||||| || | || | || | || || || || || || || || Sbjct 166587 GAGCCCTTGTAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAG 166646 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || || | |||||| || | || | || || |||| || Sbjct 166647 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGG-GCCTCTGGACTCTC 166705 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||||||||| | |||||||| |||||||| || || || || ||||| ||||| || Sbjct 166706 AAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 166765 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 166766 GCGATGGCGTTTATTTGA 166783 >seq5818 Length=23789964 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 4866332 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 4866273 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || ||| Sbjct 4866272 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 4866213 Query 46774 ACAA 46777 |||| Sbjct 4866212 ACAA 4866209 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 4865337 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4865278 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || ||||| ||||| | ||||| || ||||| || ||| Sbjct 4865277 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 4865232 >seq10551 Length=27482606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| | Sbjct 20322349 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 20322290 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 20322289 GTACTGGATTGGAAAGATGACAAATC 20322264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712349811615360