Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5812 132 1e-25 seq4924 123 6e-23 seq65597 95.1 3e-14 seq13474 84.2 5e-11 >seq5812 Length=6624047 Score = 132 bits (146), Expect = 1e-25 Identities = 165/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 3075833 CTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 3075774 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||| ||||| || ||||| ||||| ||||| |||||||||||||| | | ||| | Sbjct 3075773 CGCCCGTCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 3075716 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| ||||| || || ||||| |||| | | |||| ||| || || | Sbjct 3075715 CCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCA 3075656 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || || | |||||||||||||| ||||||| Sbjct 3075655 GGGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATCTGCATT 3075612 Score = 127 bits (140), Expect = 5e-24 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| |||| | || Sbjct 3076061 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 3076002 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||| ||||| || ||||| ||||| ||||| |||||||||||||| | | ||| | Sbjct 3076001 CGCCCGTCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 3075944 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| || || || || ||||| |||| | | |||| ||| || || | Sbjct 3075943 CCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCA 3075884 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || | ||||||||||||| |||||| Sbjct 3075883 GGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 127 bits (140), Expect = 5e-24 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| |||| | || Sbjct 3076289 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 3076230 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||| ||||| || ||||| ||||| ||||| |||||||||||||| | | ||| | Sbjct 3076229 CGCCCGTCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 3076172 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| || || || || ||||| |||| | | |||| ||| || || | Sbjct 3076171 CCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCA 3076112 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || | ||||||||||||| |||||| Sbjct 3076111 GGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 127 bits (140), Expect = 5e-24 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| |||| | || Sbjct 3076517 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 3076458 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||| ||||| || ||||| ||||| ||||| |||||||||||||| | | ||| | Sbjct 3076457 CGCCCGTCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGC 3076400 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| || || || || ||||| |||| | | |||| ||| || || | Sbjct 3076399 CCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCA 3076340 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || | ||||||||||||| |||||| Sbjct 3076339 GGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| |||| | || | || ||| Sbjct 3076736 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3076677 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| | Sbjct 3076676 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGT 3076619 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| |||| | | |||| ||| || || || || || | Sbjct 3076618 CCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGG 3076559 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||||||||||| |||||| Sbjct 3076558 TCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq4924 Length=6499587 Score = 123 bits (136), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| || ||||||||||| | | ||| | |||||| Sbjct 3090835 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 3090894 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 3090895 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCC 3090954 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| || ||||| || || || Sbjct 3090955 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCCACTTCCAGGGTGATG 3091011 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| |||||||| Sbjct 3091012 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 3091049 >seq65597 Length=65395183 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||| ||||| || | ||||| | | || || | Sbjct 11098459 CAAG-TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGCAGCTGTCCTCCA 11098401 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| | ||| || || || | ||||||| | | ||||| ||||||| ||| | | Sbjct 11098400 GCTGTTTGCGGGCAAAAATCAGACACTGCTGGCCAGGTGAGATGTCTTCCTTGTCTCGGA 11098341 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||| ||||| | || | |||| |||||| || ||||| || || || || Sbjct 11098340 TTTTAGCTTTGATGTTGTCAGTGGTGTCACTGAACTTG--ACCTCAAGTGTGATGGTCTT 11098283 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || |||||||||||||||| |||||| Sbjct 11098282 GCCTGTCAGAGTCTTCACGAAGATCTGCAT 11098253 >seq13474 Length=40992597 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 ||| ||||||||| ||||| ||||| | |||||| || | || || | |||||||| | Sbjct 16257483 CAACATGAAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAGGTACGTCCATCTTCCA 16257424 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||| | | || ||||| || | | ||||||||||| || || | Sbjct 16257423 GTTGCTTGCCAGCAAAGGTCAATCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGA 16257364 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | ||||| | ||||| || || || ||| | ||||| || | Sbjct 16257363 TCTTGGCCTTTACATTTTCTACTGTAACTGAAGCTTCAACCTCGAGAATGATAGTCTTCC 16257304 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | || || |||| ||| | |||||| || Sbjct 16257303 CTATAAGGGTTTTCATGAAAATCTGCATCTT 16257273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152851043184258