Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq14121 89.7 5e-13 seq12054 84.2 2e-11 seq5818 84.2 2e-11 >seq14121 Length=32252759 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| |||||||||||||||||||| ||||| Sbjct 31000031 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTA 30999972 Query 8447 GCTGGGATTACAGGCAAAAGCCAC 8470 ||||||| |||||||| | ||||| Sbjct 30999971 GCTGGGACTACAGGCACATGCCAC 30999948 >seq12054 Length=25135041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| ||||| || |||||||||||||||| |||||||||||| |||||||| | Sbjct 20050852 CTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAGGCACA 20050911 Query 8465 AGCCACCACGCCAAGCTAATTTT 8487 |||||| ||| ||| |||||| Sbjct 20050912 CACCACCATGCCCAGC-AATTTT 20050933 >seq5818 Length=23789964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 ||||||||| |||| | ||||| |||||||| ||||||||||| ||||||| ||||||| Sbjct 18927972 GAACTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAAGAGCTGGGACTACAGGC 18928031 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | |||| |||||||| Sbjct 18928032 ACGTAACACCACGCCTGGC 18928050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521060392877200