Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5812 150 1e-31 seq4924 131 1e-25 seq65591 96.9 2e-15 seq3210 95.1 9e-15 seq2541 91.5 1e-13 seq65597 86.0 5e-12 >seq5812 Length=6624047 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 3076071 CATCCCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 3076012 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 3076011 GGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 3075952 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | |||| | ||||||||| || | Sbjct 3075951 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCT 3075893 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 3075892 CCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3075841 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 3076299 CATCCCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 3076240 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 3076239 GGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 3076180 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | |||| | ||||||||| || | Sbjct 3076179 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCT 3076121 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 3076120 CCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076069 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 3076527 CATCCCACCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 3076468 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 3076467 GGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 3076408 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | |||| | ||||||||| || | Sbjct 3076407 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCT 3076349 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 3076348 CCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076297 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 3075843 CATCCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 3075784 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 3075783 GGAGAGGGTGCGCCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 3075724 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||| | |||| | ||||||||| || | Sbjct 3075723 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCT 3075665 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | |||||||||||||| ||||| Sbjct 3075664 CCACCTCCAGGGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATCTGCAT 3075613 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||||||||| |||| || ||| |||| ||| Sbjct 3076733 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3076674 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| | |||||| || | || | || ||||| ||| Sbjct 3076673 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3076614 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||||||| || |||||||||| || || ||||| Sbjct 3076613 ATCTTGGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 3076555 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||| ||||| Sbjct 3076554 ACCGGTCAAGGTCTTCACGAAGATCTGCAT 3076525 >seq4924 Length=6499587 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || || ||||||||||| | Sbjct 3090820 CCGCCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 3090879 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| |||| || Sbjct 3090880 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3090939 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 3090940 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 3090999 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||||||||| Sbjct 3091000 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 3091046 >seq65591 Length=11041708 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 ||||||||||| || ||||| ||| ||||||||| ||| ||||||| | | || | | Sbjct 2177373 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGAT-ATG 2177431 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||| ||||| || |||||||| | | ||||||| | ||| | ||||| Sbjct 2177432 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2177491 Query 44239 CTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 ||| ||| ||||| | || || || |||| || || | || ||| |||| | | Sbjct 2177492 CTTATCCTGGATCTTGGCCTTTGTATCTT-CTATTGTATCTGAGGGTTCAACCTTGAGAG 2177550 Query 44298 TAATCGTCTTTCC-CGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| || | | ||||| ||||| || || ||||| Sbjct 2177551 TAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCAT 2177591 >seq3210 Length=13039658 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||| || || ||| || ||||||||||| |||| || | | | || ||| Sbjct 10166737 ACCAGGTACAGAGTAGACTCTTTCTGGATGTTGTAGTCGGACAGGATGTGTCCATCTTCC 10166796 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| |||| ||||||||||| | || ||||| | || | || || || || Sbjct 10166797 AGCTGTTTCCTGGCAAAGATCAGCCTCTATTGATCAGGGGGGATGCCCTCTTTATCTTGG 10166856 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || |||| || | | ||||||||| || | |||||||| || || ||||| Sbjct 10166857 ATCTT-GGCCTCAACGTGCTCAATGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTCTT 10166915 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | || | ||||||||||||||| |||| Sbjct 10166916 CTCGGTCAAGGTCTTCACGAAGATCTGCA 10166944 >seq2541 Length=1506631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 ||||||||||| |||| ||| ||||||||| ||| |||| || | | || | || Sbjct 494134 AGTCTCAACACAAGGT-----GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGT-ACG 494187 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 |||| ||||| ||||| | |||||| ||| | |||||||| | ||| ||||| Sbjct 494188 TCCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTC 494247 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| || | | || ||| ||||| | || Sbjct 494248 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 494307 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||| ||||| ||||| || || ||||| Sbjct 494308 GAAGGACTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 494346 >seq65597 Length=65395183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| ||| || || |||||||| || | ||| ||| | ||| || Sbjct 13732732 CACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTC 13732791 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| || || ||||| |||| || |||||| || || | |||||||| || Sbjct 13732792 CAGCTGTTTGCCCGCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCG 13732851 Query 44248 TATCTTCTGCTTCAATGTTCCTA-TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| | ||| | |||||| || || |||| ||||| |||| Sbjct 13732852 GATTTTA-GCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCT 13732910 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| | || |||||||||||||| ||||| Sbjct 13732911 TGCCCATCAGTGTCTTCACGAAGATCTGCAT 13732941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359702596449966