Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3928 179 5e-40 seq11115 114 2e-20 >seq3928 Length=19980961 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||| |||||||||||| || ||||| || ||||| ||||| Sbjct 5933863 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 5933804 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || || | ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 5933803 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAC 5933744 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || ||||||||||| | | Sbjct 5933743 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 5933684 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 5933683 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 5933635 Score = 138 bits (152), Expect = 2e-27 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||||| | | | ||||| || || || || | |||| ||||||||||| | Sbjct 5935452 GAACACTGAACGAAGTCGAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 5935393 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 ||| | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 5935392 AGGCGGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 5935333 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 || || || || | || |||| || ||||| | |||||| || || || | || | Sbjct 5935332 GAGGAGAACATATAGCATTACCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAAGTTCCA 5935273 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| |||||||| |||| | | | |||| Sbjct 5935272 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACA 5935213 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || ||||| || | || ||||| || ||||| |||| Sbjct 5935212 GCTCCATGGCATCAATGTCACCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 5935153 Query 8583 CTGT 8586 |||| Sbjct 5935152 CTGT 5935149 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 5933287 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 5933228 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 5933227 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 5933168 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || || | || | || ||| ||||||||||| Sbjct 5933167 AGGGACAAACTTTCTTCTTAGGAGAAATTTTTCCACAA 5933130 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || ||||||| || || || |||| || | Sbjct 5932687 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 5932628 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 5932627 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 5932568 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 ||||||||||||| ||||| ||||| |||| Sbjct 5932567 GGAGGGCTGTCAACCAAATGTGATCTGGCTGA 5932536 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || | Sbjct 5934473 CTTACCCTGCCAGCAATTTGCCTACTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 5934414 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACT-TTGTTTTATCAATCTC 9062 | | |||||| |||||||||| || | ||||| |||| ||| | | || |||| Sbjct 5934413 AGTAATATGGAGTTGTTGTAGATAAACTGTCGATAGTCGTACTCTTGGTCT-TCGATCTG 5934355 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 5934354 AAAGGTGTCAGGCAAAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 5934295 Query 9123 ATTTTGGTACTGGAA 9137 |||||||||||||| Sbjct 5934294 GTTTTGGTACTGGAA 5934280 >seq11115 Length=7242935 Score = 114 bits (126), Expect = 2e-20 Identities = 209/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 ||||| || ||||| || | | ||||| |||| |||| ||||| || || Sbjct 46354 TCGGGCACACGGAAGGCAACATAGGGACAAGTCTTGGTGTTGAGGCAGACCAGCTTCTTC 46413 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | || || | ||||| || ||| || | || || || || ||||| | ||||||| Sbjct 46414 AGTGTGGCCGTTTTGACAATGTTGAAGCCTATCTCGCCACCAAATGTGCTTGACTTCCAG 46473 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| |||| || |||||| ||| ||| |||||| |||||||| || |||||||| | Sbjct 46474 TACTCCGGAGAACAGATGGGATTCCCCAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATT 46533 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | || || || || ||||||| ||| ||| || ||| || | | | ||| | Sbjct 46534 TCTATCATACTTTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGA 46593 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 || | ||||| || || | ||||||||| | || | || || || ||||||||| Sbjct 46594 TAGAACTCCAAGGCATCAATGTCTCCGTACAACTCCTCCAACTCAGCTGCCATCTCCTTT 46653 Query 8579 TCTCCT 8584 |||||| Sbjct 46654 TCTCCT 46659 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| |||||| || || |||||||| || |||||||| | ||| || || Sbjct 53644 TCACCGATAAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTAGGGTGC 53703 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 53704 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATAGAGC 53763 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | |||||| || |||| || || || |||| Sbjct 53764 ATGAGCCCAGGAAGCAGGCCGAACACCTCCTGGCCCACTGCCA 53806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716288978945920