Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5812 154 4e-32 seq10551 131 4e-25 seq4361 95.1 3e-14 seq2193 84.2 5e-11 >seq5812 Length=6624047 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 3076528 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3076585 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 3076586 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3076645 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| ||||| ||| | || || |||| || ||| Sbjct 3076646 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAACA 3076705 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 3076706 TCCAGAAAGAGTCCACCCTGCACCTGGT 3076733 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| ||| | || || || || |||||||| |||||||| || ||| Sbjct 3075616 CAGATCTTCGTGAAGACTTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3075673 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 3075674 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 3075733 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| ||||| || | || || |||| || ||| Sbjct 3075734 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 3075793 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 3075794 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGA 3075834 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 3075844 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3075901 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 3075902 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3075961 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| ||||| || | || || |||| || ||| Sbjct 3075962 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 3076021 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 3076022 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 3076062 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 3076072 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3076129 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 3076130 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3076189 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| ||||| || | || || |||| || ||| Sbjct 3076190 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 3076249 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 3076250 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 3076290 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 3076300 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3076357 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 3076358 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3076417 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| ||||| || | || || |||| || ||| Sbjct 3076418 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 3076477 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 3076478 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 3076518 >seq10551 Length=27482606 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| || || Sbjct 16152184 CAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTGAACCCTTGGAT 16152243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || |||| ||| ||||| || |||||| Sbjct 16152244 ACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCAGCAA 16152303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| | ||| || || || || || ||||||||| | ||||| | || || ||| | Sbjct 16152304 AGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAACATT 16152363 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || || |||||||| ||| Sbjct 16152364 CAAAAGGAGTCCACGCTTCATCTTGTGTTG 16152393 >seq4361 Length=21435851 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || | || || || ||||| | |||||| | || ||| Sbjct 2916621 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCA--GCCCAGTG 2916564 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||||||| || | || ||||| || || ||||| || |||||| Sbjct 2916563 ACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCAGG 2916504 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || | || || || |||||||| || |||| | |||| | || ||||| Sbjct 2916503 AGGGTCTGAGTTTTGCGGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTATAATA 2916444 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 2916443 TCCAGAAAGAGTCCACCCTGCA-CTTG 2916418 >seq2193 Length=10573696 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/195 (71%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| | ||| Sbjct 4126792 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GTCCAGCA 4126849 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGA-ATCCCTCCGGACCAG 178040 ||||||||||||| ||||| ||||| || ||| |||||| | || || || |||| Sbjct 4126850 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGAC-AAGAAGAACATTCC-CCCAACCAA 4126907 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| | |||||| ||||| |||||||| | | || || | || || Sbjct 4126908 CAGAGGCCGATCTTTGTCGGAAAGCAGCTGGAAGATGGGCGCTCCCTGTCCAACTACAAT 4126967 Query 178101 GTCCAAAAAGAATCA 178115 |||| ||||| ||| Sbjct 4126968 ATCCAGAAAGAGTCA 4126982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202719494772012