Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq269 105 5e-18 seq55 93.3 3e-14 seq54 84.2 2e-11 >seq269 Length=1942430 Score = 105 bits (116), Expect = 5e-18 Identities = 214/313 (68%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC-TGTCAATC 18856 ||||| |||| ||||| ||||||| ||| || || ||| | ||||| ||| | || Sbjct 1775860 GGCCCAGTTTATGGCTTTCAGTGGAAGTCTTTGGGGGCAGAAGACAAAGATATGT-ATTC 1775802 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 | | || | | |||||| || || ||||| | || | | | |||| ||||| || Sbjct 1775801 AGATTACTCAGGTCAAGGAGCAGACCAACTGCACAAGGTGACACA--CAATCAAAACCAA 1775744 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| || | || |||| || | | |||||||||||||| ||| | || | |||| Sbjct 1775743 CCCTGATGACAGAAGAATCATCCTGTGTTCTTGGAATCCAAAAGATTTTCCTTGCATGGC 1775684 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 ||||||| ||||| || | || || | || | | |||| |||| | |||||||| Sbjct 1775683 CCTACCTCTGTGTCATACCCTTTGCCATCTCTATATGGTAAACAGTGAGCTGTCCTGCCA 1775624 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGC 19096 | ||| |||| || | || |||||||| || || || |||||| |||| |||| | Sbjct 1775623 GCTGTACAAGAGGTCAGCAGACATGGGCCTAGGTGTGCCCTTCAACGTTGCCAAATATTC 1775564 Query 19097 ACTTCTTACCTAC 19109 || || ||||| Sbjct 1775563 CCTGCT--CCTAC 1775553 >seq55 Length=9207070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||||||||||| || || | || ||||| || || | || ||||| | ||| Sbjct 7111148 ATGGCCCTACCTCCATGCCATACCCTTTGCCAGTTCTATGTGGTGAATGGTGAGCTGTCC 7111207 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || | ||| ||||||||||| || || |||||||| || | Sbjct 7111208 TGCCAGCTGTACCAGAGGTCAGCGGACATGGGCCTTGGTGTGCCCTTCAACATCGCCAGC 7111267 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || ||||| || | || || | ||||| || || Sbjct 7111268 TACGCCCTGCTCACCTATATGATCGCACACATCACAGGCCTGAA 7111311 >seq54 Length=8220942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 271/406 (67%), Gaps = 11/406 (3%) Strand=Plus/Minus Query 18810 GGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-CAAACTATTTACA 18868 ||||| |||| ||| |||||||| || ||||| ||||| | | ||| || | |||| Sbjct 3751576 GGCTTTCAGTAGAGGCATTTTGGGGCAGAATACAAAGA-TATGAATTCAGATTATTCTAG 3751518 Query 18869 GCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||| | | || || ||| ||| | | |||||||| || || ||||| || | | Sbjct 3751517 TCAAGCAGTAGACCAACTGAAAAAGATAACTGATACAATCAACACCAACCCTGATGACAG 3751458 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 | |||| || | | ||||||||||||| || | || | ||||| || || ||| Sbjct 3751457 AAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTTCCTCTCATGGTCTTATCTGCATA 3751398 Query 18989 TCACACGTTATG-TCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGA 19047 ||| | | || ||| | || || | ||| ||| | | || |||| ||| ||||||| Sbjct 3751397 TCATGCTCTTTGCTCA-TCCTATGTGGAAAATGGTAAGCTGTCTTGCC-AGTGTACCAGA 3751340 Query 19048 GATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTT-ACC 19106 | | | ||| ||| | | | || | ||||||||||| || | ||| || ||| Sbjct 3751339 GGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATTGCCAACTACTC-CTTGTTCACC 3751281 Query 19107 TACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCATACAATGGGGGA 19165 ||||| | | || ||| |||| | | || || ||||| | | || |||| || Sbjct 3751280 TACATGATCACACAAATTA-TGGACCTGAGGCCAGGTGATTTTGTATACACTTTGGGAGA 3751222 Query 19166 TGCACATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCT 19210 | | || |||||| ||||||| | || ||| | ||| ||||||| Sbjct 3751221 TTCCCACATTTACCTGAATCACACTGA-GCTGCTGAAAATGCAGCT 3751177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399328259938230