Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq353 181 8e-41 seq11 111 1e-19 seq54 100 2e-16 >seq353 Length=1843545 Score = 181 bits (200), Expect = 8e-41 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26943 ACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGC 27002 |||| | | |||||||| || || || |||||||| ||| |||| |||||||| || ||| Sbjct 211596 ACATGGCGGACAATGGGGGTGACACAGGTGCAGCCGACATTCACCAGCATCTTTTCCAGC 211537 Query 27003 CTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATA 27062 || || || |||||| | ||| || | | |||| || || |||||||| ||||| Sbjct 211536 TGGAAGGAGTTGGGGCAGTGCTGAGGCTGTCTTCGCAGGACCAGGATCTCTTGCTGGATG 211477 Query 27063 GGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGA 27122 || || ||||||| ||||| |||||| ||||| ||||||||||| || |||| ||| Sbjct 211476 GGAACGGAGTTCAGGTGGTGGTCTACCTTCCCTTCAGCATTAACGCAGAACAAGTGGCGG 211417 Query 27123 CACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| || ||||| ||||||||||||||||| || | || |||||||| Sbjct 211416 CACTTCGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTGCG 211367 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || || |||| |||||| || || |||| |||| | | | ||| Sbjct 210194 TGGAGATTCCAAGGTGAGGTGGATCGATTGTAATAATCCGAAGGCCTTCTGAGATTCGTA 210135 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGC- 27292 |||| |||| ||||| | | | ||| |||||| | | || ||| | |||| ||| Sbjct 210134 TTCCGGTTAAGGATGTTTAGGTTGACCTTCACAGTCTGAGGGAAGTTCTTGTCCTCAGTA 210075 Query 27293 --TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | |||||| ||| || ||| | ||| |||| ||| ||| |||| | | ||| Sbjct 210074 TTTGAGCATCCTGGATTTCGTGGGATTGCTATTCCTGCCTTCCCTATGGCCACCAGACTC 210015 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 210014 AGCAGCAGCAG 210004 >seq11 Length=19879869 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||| || ||| ||||| Sbjct 1623902 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTACTTCTTAACTCTGGT 1623961 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 1623962 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTTTGGA 1624021 Query 4285 AGCTCC 4290 | ||| Sbjct 1624022 GGTTCC 1624027 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||| || Sbjct 1631077 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTTGGG 1631136 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||| |||| || Sbjct 1631137 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCCTTTTACCT 1631185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| |||||||||||||||||||||||||| | |||| Sbjct 1614685 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 1614744 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||||||||| ||| ||| Sbjct 1614745 TCCTCCTGGACATCGGAAAGAACACCTGGGTAT 1614777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||||||||| |||||| |||||| || ||||| Sbjct 1621668 AAGTTTATATTTCCCCAAATCAATTTCTGGAAAAAATATGTCACTTTCAAATTCCTGCAT 1621727 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||| | || ||||| ||||||| || || ||| | |||| ||||| || Sbjct 1621728 GATCTTTGTGACAAATAGTTTAATATGGCCTGGCTTGTTCATGGCTTCCTT 1621778 >seq54 Length=8220942 Score = 100 bits (110), Expect = 2e-16 Identities = 284/430 (66%), Gaps = 5/430 (1%) Strand=Plus/Plus Query 101671 CTGCATTTTAAG-AGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGA 101729 ||||||||| || ||| ||| |||||| | || ||||| | |||||| | ||| | | Sbjct 3751179 CTGCATTTTCAGCAGC-TCAGTGTGATTCAGGTAAATGTGGGAATCTCCCAAAGTGTATA 3751237 Query 101730 TAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGC 101789 ||| || || ||| || | | | || | |||||| | || || | || ||| Sbjct 3751238 CAAAATCACCTGGCCTCAGGTCCATAATTTGTGTGATCATGTAGGTGAACAAGGAGTAGT 3751297 Query 101790 TAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGG 101849 | |||||||| || |||| | | ||| || || | || || |||| | | || | Sbjct 3751298 TGGCAATGTTGAAGAGCACACACACGTCCACGTCCACTAACCTCTGGTACACTGG-CAAG 3751356 Query 101850 AAAGCTTTCCATCACAGACATAAAATTGACTTAATA-CATGACAAGGCGGCAACACCATT 101908 | ||||| |||| ||||| || || || | ||||| | | | || ||||| Sbjct 3751357 ACAGCTTACCATTTTCCACATAGGAT-GAGCAAAGAGCATGATATGCAGATAAGACCATG 3751415 Query 101909 TTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT 101968 ||||| | | |||||||||||||| | || ||||| || |||||| || Sbjct 3751416 AGAGGAAGATATTTTGGATTCCAAGCACACAGGATAATTCTTCTGTCATCAGGGTTGGTG 3751475 Query 101969 TTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCA 102028 || || |||||| | | || ||| | |||||| ||| ||| | |||||| Sbjct 3751476 TTGATTGTATCAGTTATCTTTTTCAGTTGGTCTACTGCTTGACTAGAATAATCTGAATTC 3751535 Query 102029 ACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCT 102088 | | |||| |||||||| || ||||||||| ||||||| |||| || || || ||| Sbjct 3751536 ATATCTTTGTATTCTGCCCCAAAATGCCTCTACTGAAAGCCATTAACTGGATGAAAATCC 3751595 Query 102089 CCTTCATCTC 102098 ||||| |||| Sbjct 3751596 CCTTCGTCTC 3751605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361092287177594