Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq26467 140 4e-28 seq311 140 4e-28 seq105 114 2e-20 seq222 98.7 1e-15 >seq26467 Length=4180 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2947 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2888 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2887 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2828 Query 53270 CTATTTCTAAGACCGTA 53286 |||||||| | ||| || Sbjct 2827 CTATTTCTTATACCATA 2811 >seq311 Length=2724376 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 2492912 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 2492853 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | |||| Sbjct 2492852 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 2492793 Query 53270 CTATTTCTAAGACCGTA 53286 |||||||| | ||| || Sbjct 2492792 CTATTTCTTATACCATA 2492776 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2478019 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2477960 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| Sbjct 2477959 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCA 2477900 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 2477899 AGGCTCCAGGTAAAT 2477885 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || | || || || |||| Sbjct 2469866 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 2469807 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 2469806 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2469747 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2469746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2469701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 2482654 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 2482595 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 2482594 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 2482535 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2482534 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 2482475 Query 53570 TTATTAGA 53577 ||||| || Sbjct 2482474 TTATTTGA 2482467 >seq105 Length=3566936 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 2108971 CGACAACACGTTCTCC 2108956 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||| || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 2108096 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2108037 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || ||||||||||| | || || || ||||| |||||| Sbjct 2108036 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 2107991 >seq222 Length=2514393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 507918 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 507977 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | ||| ||||| | ||||| ||||| || |||||||||||||| || || || ||||| Sbjct 507978 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCGAAGGCC 508037 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 508038 ACCACTCTTTCCCC 508051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593453727657120