Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq35 215 6e-51 seq55 161 1e-34 seq640 159 4e-34 seq269 87.8 2e-12 >seq35 Length=8621394 Score = 215 bits (238), Expect = 6e-51 Identities = 275/376 (73%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 176869 GTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGT 176928 ||||| || ||||||||||| ||||||| |||||||| || ||| || | || ||| Sbjct 316612 GTCTCGTTCTGCCTCTGCTCGTTATGGCCATCTGCTACACTGGAATCATTAAAACGCTGA 316553 Query 176929 TGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGG 176988 |||| ||||||| || |||||||||||||||||| ||||||| ||||||||||||||| Sbjct 316552 TGAGATGCCCCAGTAAAAAGAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGA 316493 Query 176989 CCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAA 177048 || ||| |||| ||||| ||||||||| | ||||| || | || || ||||| || Sbjct 316492 TCTTTTTCCTTTTCTGGACGCCCTACAACCTGGTTCTTCTTATCTCCACTTTTCA---AA 316436 Query 177049 CC--CTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAA 177105 || |||||| |||| |||| || || | ||||| |||| |||| | | | Sbjct 316435 CCATCTTCTTCGAGAGCAGCTGTGAGCGGAACAAACAGCTGGACGTGGCCCTGCAGGTGA 316376 Query 177106 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 177165 || | | |||| ||| ||||| || ||||||| ||||||||||| || || | | Sbjct 316375 CAGAGGTGATCGCCTTCACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTTGTCAGCG 316316 Query 177166 AGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCA 177225 ||||||| | ||||| ||||||||| ||||| |||||||| |||| ||| Sbjct 316315 AGAAGTTCCGGGAGCACCTTAGCCACTTCTTTCACACGCACGTGGCCCCGCACCTGGGCA 316256 Query 177226 AGTACATCCCCTTCCT 177241 | | |||||||| || Sbjct 316255 AACATATCCCCTTTCT 316240 Score = 215 bits (238), Expect = 6e-51 Identities = 275/376 (73%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 9983 GTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGT 10042 ||||| || ||||||||||| ||||||| |||||||| || ||| || | || ||| Sbjct 316612 GTCTCGTTCTGCCTCTGCTCGTTATGGCCATCTGCTACACTGGAATCATTAAAACGCTGA 316553 Query 10043 TGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGG 10102 |||| ||||||| || |||||||||||||||||| ||||||| ||||||||||||||| Sbjct 316552 TGAGATGCCCCAGTAAAAAGAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGA 316493 Query 10103 CCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAA 10162 || ||| |||| ||||| ||||||||| | ||||| || | || || ||||| || Sbjct 316492 TCTTTTTCCTTTTCTGGACGCCCTACAACCTGGTTCTTCTTATCTCCACTTTTCA---AA 316436 Query 10163 CC--CTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAA 10219 || |||||| |||| |||| || || | ||||| |||| |||| | | | Sbjct 316435 CCATCTTCTTCGAGAGCAGCTGTGAGCGGAACAAACAGCTGGACGTGGCCCTGCAGGTGA 316376 Query 10220 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 10279 || | | |||| ||| ||||| || ||||||| ||||||||||| || || | | Sbjct 316375 CAGAGGTGATCGCCTTCACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTTGTCAGCG 316316 Query 10280 AGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCA 10339 ||||||| | ||||| ||||||||| ||||| |||||||| |||| ||| Sbjct 316315 AGAAGTTCCGGGAGCACCTTAGCCACTTCTTTCACACGCACGTGGCCCCGCACCTGGGCA 316256 Query 10340 AGTACATCCCCTTCCT 10355 | | |||||||| || Sbjct 316255 AACATATCCCCTTTCT 316240 >seq55 Length=9207070 Score = 161 bits (178), Expect = 1e-34 Identities = 133/162 (82%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||| ||||| ||||||| ||||||||| |||||||||||| Sbjct 7111308 AGGCCTGTGATGTGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 7111249 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || ||||||||| | || | |||||||||||||||||| ||||| || | || Sbjct 7111248 ACACCAAGGCCCATGTCCGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 7111189 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 || ||||||||||| ||| ||||| || || ||||||||| Sbjct 7111188 ACATAGAACTGGCAAAGGGTATGGCATGGAGGTAGGGCCATG 7111147 >seq640 Length=472180 Score = 159 bits (176), Expect = 4e-34 Identities = 132/160 (83%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 138081 GCAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATC 138140 |||||||| ||||||| |||||| || || ||||||||||| ||||||||||| | Sbjct 467150 GCAGCGCCGAAGCCTCAGCCTGAGTGTCTTCAGCTTTTCCCCAAGGGAGTTCACGTG--- 467206 Query 138141 CTTTTCCTG--GTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAAC 138198 |||| || ||| | || ||| |||| ||||||||||||||||||||||||||||| Sbjct 467207 --TTTCTTGATGTCTGGGCCCTGGCTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAAT 467264 Query 138199 TGGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct 467265 TGGATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 467304 Score = 123 bits (136), Expect = 3e-23 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 137926 TTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTC 137985 ||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 465010 TTTTTCATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTC 465069 Query 137986 ATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||| |||||||||||||| || ||||||| Sbjct 465070 ATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 465100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCAT-- 138293 |||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 467575 CCTTAAAGTCCTCCAGCAAGGACCCGTTCAGCAATATGTTGTCCAGCTGGTCCTTCATTT 467634 Query 138294 -CTGAAAGAAG 138303 ||| |||||| Sbjct 467635 GCTGCAAGAAG 467645 >seq269 Length=1942430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 || ||||| |||||||| || |||| | |||||||||||| || || |||||||| | Sbjct 1775550 CACGTAGG--AGCAGGGAATATTTGGCAACGTTGAAGGGCACACCTAGGCCCATGTCTGC 1775607 Query 145830 CGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAG 145889 || | || ||||||||||||||| ||||| | | ||| |||| ||||| ||| Sbjct 1775608 TGACCTCTTGTACAGCTGGCAGGACAGCTCACTGTTTACCATATAGAGATGGCAAAGGGT 1775667 Query 145890 GTGGCAGGGCGGCAGGGCCATG 145911 || || | || ||||||||| Sbjct 1775668 ATGACACAGAGGTAGGGCCATG 1775689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589810572099760