Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq10 297 2e-75 seq271 280 2e-70 seq69 242 4e-59 seq58 107 2e-18 >seq10 Length=15524726 Score = 297 bits (328), Expect = 2e-75 Identities = 390/538 (72%), Gaps = 2/538 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| ||||||| ||||| | | | |||| | ||| | |||| |||| ||| Sbjct 320722 CAGGGCGACGATGTCTGGCTCGATGTAGATGGTCGGAAAGCTACAGTTGTATCTGCACAC 320663 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 || || ||| ||||||| |||||||||||||||| ||| |||| |||| |||| Sbjct 320662 AGGAACGCTGTCCCGGCCCACCAGGAACTTCTCGAAGTTCTCGGCAACGTTGTTGAGGCA 320603 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || | ||| ||| |||| || ||| || ||| || | | || |||| || || Sbjct 320602 TACCAGGGACAAGGTGATGAACTTGGGCTCCGTCATGAACACAGTGGTGACGTCACTGGG 320543 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 | ||||| ||||| | | ||||||||||| || || || |||||| || |||| Sbjct 320542 CAAGGGCAGAGCCTCCCTCAAAAAGGCGAAGAGGGGGTGCACCTGTGCACCATTCCCCTC 320483 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||||| || ||||| |||||||| |||| ||| | | ||||| ||| || Sbjct 320482 GCACTTCTCGAAGAACACGAAGTTGGGCTCGAACCCGTCACCAAGTCCGACGTACTTGAG 320423 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| || |||| |||| ||| || ||||| || ||||||||| | |||||||| Sbjct 320422 GGAATTCACAATCTATTTGTTCTTGGCATTCTCCTGATGCCCGAACTGGGTGCACGGGAA 320363 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 |||||||| ||||| ||| || || |||| ||||||||||||||||||| ||||| Sbjct 320362 GCCAAGCACCACCAGGTCCC-AGGGCCAGAGCGCTGCTGCAGCTCGTTCATCTGGGTGTA 320304 Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 |||||||||| | |||||||| |||| | ||||| | ||| | ||| |||||| Sbjct 320303 GCCCCGGACCGTTGTGCCTCAGAGCTACGCCATATTCTCAAAGAGTAGCACCTTGCCCCG 320244 Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 | | |||| | ||||||||| || | |||| | ||||| || |||||||| ||| Sbjct 320243 AAGGGAGCCCAGGCTCACAGGCTC-CAGCCGGCCAGTGGGCGCGCAGAGAAGGCATAC 320187 >seq271 Length=2118639 Score = 280 bits (310), Expect = 2e-70 Identities = 265/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | | |||| || ||||| ||||||| |||||| Sbjct 1791676 AGCAGGGCTTCGATGTCGGGCTCGATGTCGATGGTCGGGAAGCGGCGGCTGTATCTGCGC 1791735 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || |||||| ||||||| ||||||||||||||||||||| | |||||||||| Sbjct 1791736 ACAGGAACGCCGTCCCGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAATGTCGTTGCGG 1791795 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || ||||||||| |||| || ||| ||| ||| |||| | | ||||||| || Sbjct 1791796 CATACCGGAGACCAGATGATGAACTTGGGATCGGTCATTAGCGCGGTGGTGTCGTCACTG 1791855 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| ||||| | | ||| | ||||||||| || ||| ||| ||||| || Sbjct 1791856 GGCGCGGGCAGAGCCTCCCTCAAGAAAGTGAAGAGCGGGTGCGCCTGTGCGCCGTTCACG 1791915 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1791916 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 1791975 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | || | || ||||||||| Sbjct 1791976 AGAGAATTCAGGATCTCTTCGTTTTTGGTGTTTTCCTG 1792013 Score = 196 bits (216), Expect = 6e-45 Identities = 170/211 (81%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1792244 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACCACCAGACCCCGGGGCCCGAGGC 1792303 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 1792304 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1792363 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 1792364 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 1792423 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||| ||||| || Sbjct 1792424 CCAGCGGGCGCGCGGAGAAGGCATACACGGA 1792454 >seq69 Length=6715968 Score = 242 bits (268), Expect = 4e-59 Identities = 308/422 (73%), Gaps = 25/422 (6%) Strand=Plus/Plus Query 83058 GCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT-ACCTGCGC 83116 ||||| |||||||||||||| | | | | || | | |||||||||||| | |||||| Sbjct 3609132 GCAGGATTTCGATGTCGGGCTCGATGTCGATGGACGGAAAGCGGTGGCTGTTATCTGCGC 3609191 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || |||||| | |||||| |||| ||||||||||||||| |||||||||||| Sbjct 3609192 ACAGGAACGCCGTCCCCGCCCACCCGGAACCCCTCGAAGTTCCAGGCAACGTCGTTGCGG 3609251 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || | |||||||||| ||||| || ||| ||| ||| ||||| || |||| || Sbjct 3609252 CATCCCGGAGACCAGGTAATGAACTTGGGATCGGTCATGAGCGCAACAGTGACGTCACTG 3609311 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| |||| |||||||| |||||| ||||| || ||||| Sbjct 3609312 GGCGCGGGCA-------------GAAGGCGAGGAGCGG--GTGCCATT-CACCG------ 3609349 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | || || |||||||| | | ||||| || |||| ||| Sbjct 3609350 -CGCACTTCTCGAAGAGCGTGAATTTGGGCTCGAACCTGCCGCCAGGTCGCACGTACTTG 3609408 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||||| || |||||| | ||| ||| || |||| || ||| ||||||| ||| | Sbjct 3609409 AGGGACCTCAGGATCTCTTCGTTCCTGGCATTGGCCTGATGCCCGCACTGGTTGCAC-AG 3609467 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 | | ||||| ||||| | ||| | || |||||||||||||||||||||||| | ||| Sbjct 3609468 AGGCAGAGCACCACCAGACTCCGCGGCCCGAGGCGCCGCTGCAGCTCGTTCATCCGGGTG 3609527 Query 83477 TA 83478 || Sbjct 3609528 TA 3609529 >seq58 Length=11139283 Score = 107 bits (118), Expect = 2e-18 Identities = 203/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 929338 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 929396 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| | | || || |||||||| || |||||||||| || ||| | ||| ||| Sbjct 929397 TTGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAATTGCA 929456 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 ||||||| | |||||| |||| || |||||| ||| | | |||| || ||| Sbjct 929457 GCGGCTCCCTAGGCAAGAAGCAG-CTGGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 929512 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| ||||| ||||| |||| |||| || Sbjct 929513 TACGTGCAGCTGCTCTACCCACGGGCCAAGAACGACCGCGTCTGGACGCTGGAGTTTGTG 929572 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||||||||||||||||||||| | |||||| || |||||| Sbjct 929573 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 929620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608522126103760