Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq44 120 3e-22 seq102 98.7 8e-16 seq11601 89.7 4e-13 seq12 86.0 5e-12 >seq44 Length=10323257 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||||| || ||||| || |||||||| || || | || || || | || ||| Sbjct 7626807 ACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 7626866 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| ||||| ||| | || || ||||||||||| ||| | |||||||| || | Sbjct 7626867 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTGG 7626926 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| ||||| | | | || |||| |||||| |||| ||| ||||||||| Sbjct 7626927 ATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 7626986 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| | || || || || ||||||||||||| Sbjct 7626987 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 7627020 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || |||||||| || || | || || || | || Sbjct 7626576 AGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 7626635 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 7626636 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCC 7626695 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| ||| ||| ||||| ||| |||||| Sbjct 7626696 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTC 7626755 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 7626756 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq102 Length=6558185 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||| || |||||||| ||||| | || || | |||| Sbjct 2020072 AGCACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCC 2020131 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||||||| |||| || | |||| |||| || | |||||||||||| Sbjct 2020132 TCCAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCT 2020191 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | || | || |||||| | ||||||||| Sbjct 2020192 CGGATTTTAGCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTC 2020251 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | | || || || || |||||||| Sbjct 2020252 TTGCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq11601 Length=6222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || || ||||| | || || ||| | ||| Sbjct 4327 AGCACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTCGG--AGAGTGTGGCCATCC 4383 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||||||| ||||||| | ||||||||| | | ||| |||| || Sbjct 4384 TCCAGCTGTTTGCCCGCAAAAATAAGACACTGCTGGTCAGGTAGGATGCCCTCCTCATCT 4443 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGT---ATCACCGGGCTCCGTTTCCACGGTAATG 21140 ||| ||| | || || | |||| ||||| |||||| || | | ||| Sbjct 4444 TGGAT-TTTAGCTTTGCCATTC--TCAGTGGCATCACTGGGCTCGACCTCGAGTATGATG 4500 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||| || ||| | | ||| |||| ||| Sbjct 4501 GTCTTGCCGGTCAAGGTTATCATAAAGATTTACAT 4535 >seq12 Length=16976894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || |||||||| | | || || | | | Sbjct 6395808 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCATTC 6395749 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| || | || | ||||||||| || | ||| |||||||| Sbjct 6395748 TCCAGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 6395689 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 | | || ||| || | ||| || |||| ||||| || || |||||| Sbjct 6395688 TGGGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGATGGTC 6395629 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | | || || ||||| |||||||| Sbjct 6395628 TTGCCCATCAGGGTCTTCACAAAGATTTGCAT 6395597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422073450025304