Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq28161 131 5e-26 seq28435 127 6e-25 seq30356 100 8e-17 >seq28161 Length=442 Score = 131 bits (144), Expect = 5e-26 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7055 GGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGC 7114 |||||| |||| | | ||||||||||||| |||||||| || | | ||||| || Sbjct 196 GGCCCAGTCGGAACCCTTTTCTGGAGTATTCCCCATGACTTGCAATGTACCCCTGATCGC 137 Query 7115 TCGGCTGAATGAACTTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCA 7174 || |||||||| ||||| || |||||||||| || ||| ||| |||||| || || Sbjct 136 CCGCCTGAATGACCTTGGCACTCAGCTTAACCCAGAGGTCCCCACGGACGGCACGATCCA 77 Query 7175 GGAACTCACTATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCACCTCGGT 7234 |||| | || |||| || | ||| || ||| ||||| ||||||| || |||| ||| | Sbjct 76 GGAAATAACGATGCATACTTATGACCTAGAAAAGGAGATGGATGGTGATGCCAGTTCGAT 17 Query 7235 TGACGGCGAAAGCGG 7249 |||||| |||| ||| Sbjct 16 TGACGGTGAAAACGG 2 >seq28435 Length=83722 Score = 127 bits (140), Expect = 6e-25 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 7095 GAGAAAGAAAAGCTGATTGCTCGGCTGAATGAACTTGGTACCCAGCTTAACCGCGAAGTC 7154 || ||| |||| ||||| ||||| |||||||| ||||| || | ||||||||||| ||| Sbjct 83589 GACAAACAAAACCTGATCGCTCGCCTGAATGACCTTGGCACAAATCTTAACCGCGAGGTC 83648 Query 7155 AGCACCAGCGGCACCATTCAGGAACTCACTATGCGTATTGCTGAGCTTGAAGAGGAGCTG 7214 | |||||| ||| | ||||||||| | || ||| || ||||||| || ||| |||||||| Sbjct 83649 ATCACCAGGGGCGCGATTCAGGAATTTACGATGGGTTTTGCTGATCTGGAACAGGAGCTG 83708 Query 7215 GATGGAGACGCCA 7227 ||||| || |||| Sbjct 83709 GATGGTGATGCCA 83721 >seq30356 Length=1561 Score = 100 bits (110), Expect = 8e-17 Identities = 121/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 7063 CGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGA 7122 |||| |||||||||| | ||| ||| |||| | | |||||| ||||| |||| Sbjct 1036 CGGGGCACCTTTCTGCAACATTTCCCCCGACACC-ACTGTGTGGCTGATCGCTCGCCTGA 1094 Query 7123 ATGAACTTGGTACCCAG-CTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTC 7181 |||| ||||| || || ||||||| || |||| |||||||||| ||||||||||| Sbjct 1095 ATGACCTTGGGACTCAAACTTAACCCCGCGGTCACCACCAGCGGCTG-ATTCAGGAACTT 1153 Query 7182 ACTATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGA 7222 ||| ||| ||||||||| | ||| | ||||||| ||| || Sbjct 1154 ACTGTGCCTATTGCTGATGTGGAACACGAGCTGGGTGGTGA 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148214845468236